PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G07080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 304aa MW: 33146.2 Da PI: 4.9479 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.5e-19 | 59 | 112 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k OPUNC10G07080.1 59 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 112 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.9 | 3.6e-40 | 58 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal+ e ++L++++++L++e+ + OPUNC10G07080.1 58 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIVQ 150 69**************************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 36 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.35E-18 | 51 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 57 | 118 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-16 | 59 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.69E-16 | 59 | 115 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.7E-13 | 114 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MKRPTCRGSS MAISDQQEDN MRSYMDGAAA AVYEEEEEEE EEVEDDGGGG GGGGGLGEKK 60 RRLAAEQVRA LERSFEADNK LDPERKARIA RDLRLHPRQV AVWFQNRRAR WKTKQIERDF 120 AALRSRHDAL RLECDALRRD KDALAAEIVQ LRDKVDKQMS VKLEAVATDE QPPPPPTLTT 180 PTQSAAAYNS SNKVVDGSTD SDSSAVFNEE ASPYSGAAID HNHHHHHHQT PASYDTAGFT 240 SFFAPSNTLT SSLSFPSMFH GSSHFDGQEL LAGAGAADAD LGGAGFFAGD EHAGGLSWYG 300 PEGW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 114 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837674 | 0.0 | CT837674.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613231.1 | 1e-149 | homeobox-leucine zipper protein HOX8 | ||||
Swissprot | Q338Z7 | 1e-150 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A0E0M741 | 0.0 | A0A0E0M741_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G07080.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 3e-32 | homeobox protein 16 |
Publications ? help Back to Top | |||
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