PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G06950.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1029aa MW: 115019 Da PI: 5.8366 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.3 | 2.2e-56 | 21 | 138 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f OPUNC10G06950.2 21 LKEaQQRWLRPAEICEILKNYKRFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 114 45559***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhyle+k OPUNC10G06950.2 115 QRRTYWMLEEDFMHIVLVHYLETK 138 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.94 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-77 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.0E-50 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.9E-5 | 453 | 538 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.29E-18 | 453 | 539 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 7.0E-8 | 453 | 531 | IPR002909 | IPT domain |
CDD | cd00204 | 1.92E-11 | 637 | 746 | No hit | No description |
SuperFamily | SSF48403 | 3.11E-15 | 645 | 748 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.9E-16 | 647 | 750 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.433 | 654 | 748 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 687 | 719 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 4.25E-8 | 843 | 897 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 846 | 868 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 847 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.023 | 848 | 867 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 871 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 872 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1029 aa Download sequence Send to blast |
MASADARRFA VVPQLDIAQI LKEAQQRWLR PAEICEILKN YKRFRIAPEP PNRPQSGSLF 60 LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH ERLKSGSIDV LHCYYAHGEE NENFQRRTYW 120 MLEEDFMHIV LVHYLETKGG KSRTRGNNDM HQAAVMDSPL SQLPSQTIDG ESSLSGQFSE 180 YEEAESGGTG YHSFTQMQQQ QNGIGPVTDA SMFSSRVSAS SIGNYQGQHA MGHTTGFYSS 240 SQHDSPLVLS DPSLELANNG HEPLWNGVMK PDEGTVQMSH LQPPVHPEQG MFTTEGQGVE 300 YLTFDEVYSD GLSLKDISAA GADVEPFWQF SSNSYLTEAI AFQFSSPTAD ISATENSIQQ 360 NDGSLGAAIG FPFLKTQSSN LSDILKDSFK KSDSFTRWMS KELLDVEDSQ IQSSSGAYWN 420 TEEADSIIEA SSREPLDQFT VAPMVLQDQL FSIVDFLPSW TYAGSKTKVL VTGRFLHANE 480 VTERCKWSCM FGEVEIPAEI SADGTLRCYS PPHKPGRVPF YVTCSNRLAC SEVREFEFRP 540 SDSQYMDAPS PLGATNKVYF QIRLDNLLSL GPDEYQATIT NPSKEMIDLS KKISSLLANN 600 DEWSKLLKLA DDNEPLTDDQ QDQYAENLIK EKLHVWLLHK VSDGGKGPSV LDDEGLGVLH 660 LAAALGYDWA IRPTVTAGVN INFRDFHGWT ALHWAAFCGR ERTVVALIAL GAAPGALTDP 720 HPNFPAESTP ADLASANGHK GISGFLAESS LTSHLQALNL KEANMSEISG LPGIGDITER 780 NASQPAIGDS LGAVRNAAQA AARIYQVFRV QSFQRKQAVQ YEGDKGGISD ERTLSLLSMK 840 SGQLDPLHAA ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV 900 EKVILRWRRR RAGLRGFRPT EGSIESSSGG TSSNLVTDKP AGDDYDFLQE GRKQTEERLQ 960 KALARVKSMV QYPEARDQYQ RILNVVSKMQ ESQTVQEKIL DESTEMDEGD FMSEFKELWD 1020 DDTPLPGYF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00042 | PBM | Transfer from AT2G22300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101479 | 0.0 | AK101479.1 Oryza sativa Japonica Group cDNA clone:J033041A20, full insert sequence. | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614396.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A0E0M726 | 0.0 | A0A0E0M726_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G06950.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |