PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G06950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1029aa    MW: 115019 Da    PI: 5.8366
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G06950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.2e-56211382118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  OPUNC10G06950.1  21 LKEaQQRWLRPAEICEILKNYKRFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 114
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  OPUNC10G06950.1 115 QRRTYWMLEEDFMHIVLVHYLETK 138
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9417143IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7720138IPR005559CG-1 DNA-binding domain
PfamPF038599.0E-5023136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.9E-5453538IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.29E-18453539IPR014756Immunoglobulin E-set
PfamPF018337.0E-8453531IPR002909IPT domain
CDDcd002041.92E-11637746No hitNo description
SuperFamilySSF484033.11E-15645748IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-16647750IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.433654748IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736687719IPR002110Ankyrin repeat
SuperFamilySSF525404.25E-8843897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748847876IPR000048IQ motif, EF-hand binding site
PfamPF006120.023848867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542871894IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MASADARRFA VVPQLDIAQI LKEAQQRWLR PAEICEILKN YKRFRIAPEP PNRPQSGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVKEAH ERLKSGSIDV LHCYYAHGEE NENFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSRTRGNNDM HQAAVMDSPL SQLPSQTIDG ESSLSGQFSE  180
YEEAESGGTG YHSFTQMQQQ QNGIGPVTDA SMFSSRVSAS SIGNYQGQHA MGHTTGFYSS  240
SQHDSPLVLS DPSLELANNG HEPLWNGVMK PDEGTVQMSH LQPPVHPEQG MFTTEGQGVE  300
YLTFDEVYSD GLSLKDISAA GADVEPFWQF SSNSYLTEAI AFQFSSPTAD ISATENSIQQ  360
NDGSLGAAIG FPFLKTQSSN LSDILKDSFK KSDSFTRWMS KELLDVEDSQ IQSSSGAYWN  420
TEEADSIIEA SSREPLDQFT VAPMVLQDQL FSIVDFLPSW TYAGSKTKVL VTGRFLHANE  480
VTERCKWSCM FGEVEIPAEI SADGTLRCYS PPHKPGRVPF YVTCSNRLAC SEVREFEFRP  540
SDSQYMDAPS PLGATNKVYF QIRLDNLLSL GPDEYQATIT NPSKEMIDLS KKISSLLANN  600
DEWSKLLKLA DDNEPLTDDQ QDQYAENLIK EKLHVWLLHK VSDGGKGPSV LDDEGLGVLH  660
LAAALGYDWA IRPTVTAGVN INFRDFHGWT ALHWAAFCGR ERTVVALIAL GAAPGALTDP  720
HPNFPAESTP ADLASANGHK GISGFLAESS LTSHLQALNL KEANMSEISG LPGIGDITER  780
NASQPAIGDS LGAVRNAAQA AARIYQVFRV QSFQRKQAVQ YEGDKGGISD ERTLSLLSMK  840
SGQLDPLHAA ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV  900
EKVILRWRRR RAGLRGFRPT EGSIESSSGG TSSNLVTDKP AGDDYDFLQE GRKQTEERLQ  960
KALARVKSMV QYPEARDQYQ RILNVVSKMQ ESQTVQEKIL DESTEMDEGD FMSEFKELWD  1020
DDTPLPGYF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1014790.0AK101479.1 Oryza sativa Japonica Group cDNA clone:J033041A20, full insert sequence.
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0E0M7260.0A0A0E0M726_ORYPU; Uncharacterized protein
STRINGOPUNC10G06950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains