PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G03390.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 467aa    MW: 52542.8 Da    PI: 4.3892
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G03390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.76.9e-30321622127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatgk 88 
                       pG++F P+deelv++yL+ k+eg++ ++ ++i+evdi++++P +L +k+k+ +e++wyfF+ r+ ++++  +++nr+     +++g W+atg+
  OPUNC10G03390.1  32 DPGYHFVPSDEELVDFYLRGKIEGRRPPM-DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTVRKPSKTKkRDEPNRKvvvdgVEEGSWSATGS 124
                      69************************999.99**************8555554888*****9988766642678899656666679******** PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++ k +++ +g+k++L++ + r+p+  + +W mhey 
  OPUNC10G03390.1 125 VVYICGKdQETIIGTKRVLTYKSVRSPE--EDKWSMHEYI 162
                      ****998566669*********999998..899******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3527180IPR003441NAC domain
PROSITE profilePS5100535.83731180IPR003441NAC domain
PfamPF023651.3E-1733162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTTESNAGDG SAAAPASNGD RRHKLEPHLR LDPGYHFVPS DEELVDFYLR GKIEGRRPPM  60
DFINEVDIMS FDPVKLIEKY KGYGENRWYF FTVRKPSKTK KRDEPNRKVV VDGVEEGSWS  120
ATGSVVYICG KDQETIIGTK RVLTYKSVRS PEEDKWSMHE YIMVDKSQMD QYVLCAIQFK  180
HTYEAEKKVQ EEKKRGVKRK RTATRKGRKG DIDQTTSQEQ EEDQQQETSP PGDPHDQSVD  240
ASYCSMQMML GGEEEVAPSP WCDDCMTQPD QTEYPAVWYF QQEQQPLCFV DRLMMTQGYI  300
GDISYIQNQF DQHQADDHGS IAFDEALDQR HDTNFTWDNA GIYPGNNLLD GNLDDYTQNQ  360
FGNQATLGPL VGGLEHGTGY QFHDTIQAMP GSDDACAQSM GIQPAAAGHS IGDDDDTWCN  420
DDLSSLLDDI SRSLLLDGNG VIENEGNPEG SNQGLQISAK MDTNGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-182818214167NO APICAL MERISTEM PROTEIN
1ut4_B9e-182818214167NO APICAL MERISTEM PROTEIN
1ut7_A9e-182818214167NO APICAL MERISTEM PROTEIN
1ut7_B9e-182818214167NO APICAL MERISTEM PROTEIN
3ulx_A9e-18191772165Stress-induced transcription factor NAC1
4dul_A9e-182818214167NAC domain-containing protein 19
4dul_B9e-182818214167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0M5Y80.0A0A0E0M5Y8_ORYPU; Uncharacterized protein
STRINGOPUNC10G03390.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-22NAC-like, activated by AP3/PI