PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G18580.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 543aa MW: 59658.9 Da PI: 5.781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 27 | 48 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H OPUNC09G18580.3 27 KCTKCPREFCSSINYRRHTRVH 48 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.286 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK 60 NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG 120 NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN 180 AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ 240 RLKDFKDDDV TDRLPGTVDG TTDSSGVLSL KEATSDPGLY EQEDTQLPTP VALEDNSSFA 300 DLPVEHDIRD PGHEVNSSVI LSQQVLSRHR VGRTENLAQN SFASGGSAIG SKHPASARHS 360 HYRGTNAGTV SNRNKTWTWK VRTEIEGHSP KDELNIDDGQ EIVLDKKSRV LIGSISVAIE 420 DGSECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPVNHGD EGNGYNAHND IDVNITPTAQ 480 DHSSSSVMTD GKSCSSCCNA GLAEGGGLRG AMFSSKEAAA FLSQRWKEAI SADHVKLVLC 540 PEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 234 | ERKRMKKL |
2 | 232 | 242 | KKLRQKEQRLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102035 | 0.0 | AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611822.1 | 0.0 | uncharacterized protein LOC4347911 | ||||
Refseq | XP_015611823.1 | 0.0 | uncharacterized protein LOC4347911 | ||||
TrEMBL | A0A0E0M4S0 | 0.0 | A0A0E0M4S0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G18580.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-86 | C2H2-like zinc finger protein |