PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G17780.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 338aa    MW: 36529.1 Da    PI: 6.9497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G17780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix378.6e-1224129186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...tse 74 
                      +W+++ +  L+ea++ ++   +r+klk  +W +++  +                       ++p+qCk+k+e+++kry+++ + + +    +++
  OPUNC09G17780.1  24 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcatenaaaaaatgkPGSNTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAG 117
                      5*******************************9999999999**********9887788899******************99888776332355 PP

         trihelix  75 ssstcpyfdqle 86 
                         ++++f +++
  OPUNC09G17780.1 118 GGPSWRFFARMD 129
                      667899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1322130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDVLPDAADA APLAAAAPPQ KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWVDIAHE  60
VSAHCATENA AAAAATGKPG SNTAKTPNQC KNKIESMKKR YRAESAAAAR AGPAAAGGGP  120
SWRFFARMDG LLKGPAGAGQ PQAELSNSID LRAPPPPAAK VEIDVDADFV NQLADAGTGA  180
LSELVNAYAN GSIQEKLEKV ENSGQVEGRA AESDVNVSSP RIKEANEDAE EVDKVWDMSK  240
KRKNTEFDIA KSIELLASSF LKIERARMDL YRETERMRVE ADIKKGEMEL KRTEIMAKTH  300
LQIAKLFAKR LKECSSKTGG SSSVTAEVDN HAKKGENG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612002.10.0trihelix transcription factor ASIL1
TrEMBLA0A0E0M4G70.0A0A0E0M4G7_ORYPU; Uncharacterized protein
STRINGOPUNC09G17780.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-44sequence-specific DNA binding transcription factors