PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G13640.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 348aa MW: 38808.3 Da PI: 9.5506

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G13640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.5e-56	18	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++k+++ +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ OPUNC09G13640.1 18 LPPGFRFHPTDEELITYYLRQKIADGGFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 110 79***********************999.89***********99999************************************9 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + elvg+kktLvfykgrap+gekt+Wvmheyrl OPUNC09G13640.1 111 GqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 148 766666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	60.863	18	169	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MSMEGSGGGS AKKKEESLPP GFRFHPTDEE LITYYLRQKI ADGGFTARAI AEVDLNKCEP 60 WDLPEKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFT GQPPATPELV 120 GMKKTLVFYK GRAPRGEKTN WVMHEYRLHS KSIPKSNKDE WVVCRIFAKT AGVKKYPSNN 180 AHSRSHHPYT LDMVPPLLPT LLQQDPFGRG HHPYMNPIDM AELSRFARGT PGLHPHIQPH 240 PGYINPATPF TLSGLNLNLG SSPSMPPPPP PPPQSILQAM SMPMNQPSTT NQVMATEQMI 300 TGLANGVIPQ GTDGGFTTDV VVGGTGIRYQ NLDVEQLVER YWPGSYQM

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MSMEGSGGGS AKKKEESLPP GFRFHPTDEE LITYYLRQKI ADGGFTARAI AEVDLNKCEP  60
WDLPEKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFT GQPPATPELV  120
GMKKTLVFYK GRAPRGEKTN WVMHEYRLHS KSIPKSNKDE WVVCRIFAKT AGVKKYPSNN  180
AHSRSHHPYT LDMVPPLLPT LLQQDPFGRG HHPYMNPIDM AELSRFARGT PGLHPHIQPH  240
PGYINPATPF TLSGLNLNLG SSPSMPPPPP PPPQSILQAM SMPMNQPSTT NQVMATEQMI  300
TGLANGVIPQ GTDGGFTTDV VVGGTGIRYQ NLDVEQLVER YWPGSYQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	17	175	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	17	175	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	17	175	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	17	175	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	17	175	19	174	NAC domain-containing protein 19
3swm_B	2e-55	17	175	19	174	NAC domain-containing protein 19
3swm_C	2e-55	17	175	19	174	NAC domain-containing protein 19
3swm_D	2e-55	17	175	19	174	NAC domain-containing protein 19
3swp_A	2e-55	17	175	19	174	NAC domain-containing protein 19
3swp_B	2e-55	17	175	19	174	NAC domain-containing protein 19
3swp_C	2e-55	17	175	19	174	NAC domain-containing protein 19
3swp_D	2e-55	17	175	19	174	NAC domain-containing protein 19
4dul_A	1e-55	17	175	16	171	NAC domain-containing protein 19
4dul_B	1e-55	17	175	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102511	0.0	AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612624.1	0.0	NAC domain-containing protein 92
Refseq	XP_015612625.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	3e-83	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0M2Y3	0.0	A0A0E0M2Y3_ORYPU; Uncharacterized protein
STRING	OPUNC09G13640.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-90	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]