PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G13290.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 616aa    MW: 64411.5 Da    PI: 10.0303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G13290.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.7e-112575446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                     W t E++ll++av ++G+g+W+++a +++         g+t+ +c++r+++
  OPUNC09G13290.2 25 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRQ 75
                     9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-62179IPR001005SANT/Myb domain
SuperFamilySSF466899.79E-62380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-52578IPR009057Homeodomain-like
PfamPF002493.1E-102575IPR001005SANT/Myb domain
PROSITE profilePS500906.4932577IPR017877Myb-like domain
CDDcd001671.00E-62576No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MADGSDGPDV SPPAAAEAGG GGEIWGTLEE LLLACAVSRH GTGSWDSVAM EVQTRSPLAA  60
RPGLTPTSCR LRFRQIHRRF SVGGDGGGPA VEEEEEDDEA EGGPDASAAD GWMDELRRLR  120
VAELRREVER CDLSIGTLQT KVKRLREERE QSNHGGEGKT ETGNGDERLS SEEPGRSCRE  180
SNSTDLKPAA RAGDHSVKAE EEDDDEAAAA AKQEASGESV AASKESSDLR SSASLCRRHR  240
KPGADEDADG EEASAPRPPA QSSSQPLAAL LDTFAARFGP LLERLQERER RVPWRDQAPP  300
AGGGGAAAAE FYRDLLLLCA NALVFFPRAG PEHGAAGEAR ALVSASLRLR EPKQEPGAAA  360
AMAAAAEYPP VEDARRAEGV SGGGAGIVGS LIEKGGKPLI VCRKRSSIAK AAAAAKKEES  420
MEKGEVPEEG EGSDDGEKKV SVSAASKDKA WGLRTKKGRG PGKNSAGGGH SRKMAKLSEA  480
TTETSTDGGK KGDKKVADAA GPAKKRNAVD FLKRLNQGSS PSKKKNKGSP MGTRKRAAAT  540
SPEQPQKTRK VPGRKEAGRG GSKKGGKSAT PKRSVGRPPS KRGASAATTP PPSKRAKVSR  600
SEKTTTTTAT KRGGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612366.10.0uncharacterized protein LOC9269664
TrEMBLA0A0E0M2U00.0A0A0E0M2U0_ORYPU; Uncharacterized protein
STRINGOPUNC09G13290.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-10DNA-binding bromodomain-containing protein