PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G13290.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 644aa    MW: 67350.9 Da    PI: 10.1768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G13290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.1e-112575446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                     W t E++ll++av ++G+g+W+++a +++         g+t+ +c++r+++
  OPUNC09G13290.1 25 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRQ 75
                     9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-62179IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-52380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-52578IPR009057Homeodomain-like
PROSITE profilePS500906.4932577IPR017877Myb-like domain
PfamPF002493.3E-102575IPR001005SANT/Myb domain
CDDcd001671.07E-62576No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MADGSDGPDV SPPAAAEAGG GGEIWGTLEE LLLACAVSRH GTGSWDSVAM EVQTRSPLAA  60
RPGLTPTSCR LRFRQIHRRF SVGGDGGGPA VEEEEEDDEA EGGPDASAAD GWMDELRRLR  120
VAELRREVER CDLSIGTLQT KVKRLREERE QSNHGGEGKT ETGNGDERLS SEEPGRSCRE  180
SNSTDLKPAA RAGDHSVKAE EEDDDEAAAA AKQEASGESV AASKESSDLR SSASLCRRHR  240
KPGADEDADG EEASAPRPPA QSSSQPLAAL LDTFAARFGP LLERLQESQA VISGSKIRGG  300
VKRESQTICQ RLGPTRERRV PWRDQAPPAG GGGAAAAEFY RDLLLLCANA LVFFPRAGPE  360
HGAAGEARAL VSASLRLREP KQEPGAAAAM AAAAEYPPVE DARRAEGVSG GGAGIVGSLI  420
EKGGKPLIVC RKRSSIAKAA AAAKKEESME KGEVPEEGEG SDDGEKKVSV SAASKDKAWG  480
LRTKKGRGPG KNSAGGGHSR KMAKLSEATT ETSTDGGKKG DKKVADAAGP AKKRNAVDFL  540
KRLNQGSSPS KKKNKGSPMG TRKRAAATSP EQPQKTRKVP GRKEAGRGGS KKGGKSATPK  600
RSVGRPPSKR GASAATTPPP SKRAKVSRSE KTTTTTATKR GGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612366.10.0uncharacterized protein LOC9269664
TrEMBLA0A0E0M2T90.0A0A0E0M2T9_ORYPU; Uncharacterized protein
STRINGOPUNC09G13290.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-10DNA-binding bromodomain-containing protein