PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G09870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 403aa    MW: 43294.6 Da    PI: 4.7385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G09870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19138187255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  OPUNC09G09870.1 138 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 187
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-22138196IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-32138196IPR001471AP2/ERF domain
SMARTSM003801.2E-36138201IPR001471AP2/ERF domain
PROSITE profilePS5103223.933138195IPR001471AP2/ERF domain
CDDcd000185.57E-32138196No hitNo description
PRINTSPR003672.7E-11139150IPR001471AP2/ERF domain
PfamPF008476.8E-12139187IPR001471AP2/ERF domain
PRINTSPR003672.7E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAAAAAKKQQ GRRVTADVLW PGMRRKAAAA VVEEDFEADF  60
REFERGMSDD EAEGGGGEEE EDMVVEVPPA AAARFIARAA AKAAAGVAAP TADGMLTTKL  120
VEHDGPTARS AKRKRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT AEEAARAYDA  180
EARKIRGKKA KVNFPDEPAV AQKLSLKQNA AKQEKLAPPL KTCGDDAFFH LNNSDNDLFA  240
MLAFSDKKVP AKPAEPVDFM PPVKPLASTE TFEMNMLSDT SSNSFGSSDI GWEDDTLTPD  300
YTSVFVPNAA MPAYGEPAYL TGGAPKRMRN NYGVAVPQGN GMPNLTQNMP TFDPEMKYLP  360
LPYVESSSDE SMDSLLQNDA TQDGANNEGI WSLDELLMAA GAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19137195160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19138195563ATERF1
3gcc_A1e-19138195563ATERF1
5wx9_A4e-191381971474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8313920.0AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0M1L00.0A0A0E0M1L0_ORYPU; Uncharacterized protein
STRINGOPUNC09G09870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-26ERF family protein