PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G08830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 359aa MW: 37401.9 Da PI: 7.9551 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.9 | 2.4e-33 | 36 | 91 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRr +e OPUNC09G08830.1 36 TVYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLKCAACGCHRNFHRRLPE 91 78*****************************99********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-28 | 36 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-30 | 38 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 38 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.594 | 38 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.39E-16 | 204 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 205 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-23 | 213 | 269 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MEAMDVKYKP LVFPNGAIKK AVKPAAVAPA VGGGETVYRE CLKNHAASLG GHALDGCGEF 60 MPSPAANPAD PTSLKCAACG CHRNFHRRLP EGSPPPPPPP LPPPALPAPP MPASVLHGQP 120 HRGEETPEVR LPGVDGDESD SDSDGSEYDD ERSVSPPPPP PHLPAPVAHQ PYYPSAPHML 180 LSLGSSGQAQ RLPPQVMSPA TAPPPGGGGG MPRKRFRTKF TAEQKQRMQE LSERLGWRLQ 240 KRDEAIVDEW CRDIGVGKGV FKVWMHNNKH NYLGGHSARR SASSSASAAA AAAAHLQAST 300 AAAATAPPFN LSTNHTSPPP PHTTDFNING TATSAAAATV TAAAAGNHHE NGASSPQSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 7e-21 | 213 | 271 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005636 | 0.0 | AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610599.1 | 1e-132 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 1e-133 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0E0M176 | 0.0 | A0A0E0M176_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G08830.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 7e-27 | zinc finger homeodomain 1 |