PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G08220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11146.8 Da    PI: 8.6699
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G08220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.23.3e-162067249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie++  rqv fsk r+  + KA+EL++LC a++a ++fs+t k y +
  OPUNC09G08220.1 20 RIESEEARQVCFSKSRASFFEKASELCILCSADAAAVVFSPTAKAYSF 67
                     9******************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.1281171IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-181170IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-221285IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-131333IPR002100Transcription factor, MADS-box
PfamPF003191.5E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-133348IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-134869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAALAPRRPS LGWQKIKIQR IESEEARQVC FSKSRASFFE KASELCILCS ADAAAVVFSP  60
TAKAYSFGQP SVECILERFL QESATTETQQ GRVRVNGGMV GS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646746.17e-41PREDICTED: agamous-like MADS-box protein AGL29
SwissprotQ4PSU45e-21AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A0E0M1042e-67A0A0E0M104_ORYPU; Uncharacterized protein
STRINGOPUNC09G08220.13e-68(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]