PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G06360.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 380aa MW: 39072.1 Da PI: 5.1461

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G06360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.5	1.7e-36	72	171	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael OPUNC09G06360.1 72 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELGRQYELLHAEL 165 7******************************************************************************************* PP DUF260 95 allkee 100 ++++++ OPUNC09G06360.1 166 VAVQHH 171 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.62	71	172	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-33	72	169	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MTASSSTTTN SSSSVSTADT SSSNPPPPPP QHALHHHITS SASSGGGGGA PLAPRAPPRV 60 GVGGGGVGQS QACAACKYQR RKCNADCPLA RYFPADEQRR FLNAHHLFGV SKIQKTLRDT 120 PPELHADAMQ ALTFEANARA SDPVGGAARV VVELGRQYEL LHAELVAVQH HLKLCRQQHA 180 AAAAAAAEAA NDPLVGNDPL ADPAAEMLFA GAGAVVSNPN DDAMVDAFYA DQQTAAGDGD 240 GGGGLQEQFL VKDETQAVQP PPPQQPYEYL YYGTVGDEGS SHAWCSGNGG EADASPPMGL 300 SDQLQQCQIG AAATFVEAFD VKPDLPATME HSGSVLLEQP ERKLLAAAGS SSSSAAAAAA 360 HCQLELGCSS NAWKVGAHVN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MTASSSTTTN SSSSVSTADT SSSNPPPPPP QHALHHHITS SASSGGGGGA PLAPRAPPRV  60
GVGGGGVGQS QACAACKYQR RKCNADCPLA RYFPADEQRR FLNAHHLFGV SKIQKTLRDT  120
PPELHADAMQ ALTFEANARA SDPVGGAARV VVELGRQYEL LHAELVAVQH HLKLCRQQHA  180
AAAAAAAEAA NDPLVGNDPL ADPAAEMLFA GAGAVVSNPN DDAMVDAFYA DQQTAAGDGD  240
GGGGLQEQFL VKDETQAVQP PPPQQPYEYL YYGTVGDEGS SHAWCSGNGG EADASPPMGL  300
SDQLQQCQIG AAATFVEAFD VKPDLPATME HSGSVLLEQP ERKLLAAAGS SSSSAAAAAA  360
HCQLELGCSS NAWKVGAHVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	73	172	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	73	172	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611163.2	1e-170	protein IAL1
TrEMBL	A0A0E0M0E6	0.0	A0A0E0M0E6_ORYPU; Uncharacterized protein
STRING	OPUNC09G06360.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	1e-29	LOB domain-containing protein 7