PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G03530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26590.2 Da PI: 8.0909 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.6e-17 | 114 | 162 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW++eIrdp+ + r++lg+f+tae+Aa+a++ ++++g OPUNC09G03530.1 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIYG 162 9*******.**********75....44*******************87777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.3E-37 | 113 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.563 | 113 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.75E-28 | 114 | 169 | No hit | No description |
PRINTS | PR00367 | 3.7E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 114 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-20 | 114 | 171 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 114 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRRRVSSSSS SSSSSPTRDH KTRRSRRKLV VDEDWEAAFR EFLSRDDDDD DGGHHVVVAP 60 LIRSNKCVHG HEVVTSTVGG GAPSSRSRRR SDDDDDDGEQ RRRRRRRERR SYPYRGIRQR 120 PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGSNAKTNFP PPTPPPEQPA 180 APVAAERSPS TTPPMTTEDS GDSRILIECC SDDLMDSLLS AFDMTTGDID MRIWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-19 | 114 | 170 | 6 | 63 | ATERF1 |
3gcc_A | 9e-19 | 114 | 170 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 106 | RRRSDDDDDDGEQRRRRRRR |
2 | 99 | 105 | QRRRRRR |
3 | 100 | 106 | RRRRRRR |
4 | 100 | 107 | RRRRRRRE |
5 | 101 | 108 | RRRRRRER |
6 | 101 | 109 | RRRRRRERR |
7 | 102 | 109 | RRRRRERR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR720463 | 0.0 | FR720463.1 Oryza eichingeri partial sub1C-1 like gene 1, bio material IRGC 101429. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651344.1 | 3e-86 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0LZC9 | 1e-166 | A0A0E0LZC9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G03530.1 | 1e-167 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17972 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 6e-26 | ERF family protein |