PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 294aa    MW: 31982.8 Da    PI: 5.909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09136183455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  OPUNC08G19920.1 136 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 183
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.77E-11130187No hitNo description
SuperFamilySSF474593.66E-17130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16132196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MADFSLQHSL LLKVPAAGAA ITTTNDPNIS SFFLYNHSHG SQAPEPDNAN AAAAAAIVED  60
ASLESSVSAV LDTSPSVDRK RKAAEDSAHS KDSCKDGKSR RGKRPSKEVE EKSTTEDEPP  120
KGYIHVRARR GQATDSHSLA ERVRRERISE RMRMLQALVP GCDKVTGKAL ILDEIINYVQ  180
SLQNQVEFLS MRIASMSPVL YGFGMDSDGL HDQKIGGMFQ EALAIPTPVL NQSSPAPSQA  240
IMDTTSTTSY SLQSQQGAIS FSQDNGSYLM QAVGEPRQQE MLNQLVFNNM CSFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649580.10.0transcription factor bHLH137 isoform X1
SwissprotQ93W881e-58BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0E0LXD40.0A0A0E0LXD4_ORYPU; Uncharacterized protein
STRINGOPUNC08G19920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]