PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G19870.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 233aa MW: 24806.1 Da PI: 9.4188

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G19870.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102	8.3e-32	19	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr...atksgyWk.atgkd 89 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ e yfF+ r ++ g+ +r +++ g Wk a g+d OPUNC08G19870.2 19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGENYFFAVRPAASGGGR-CRRqqvTASGGCWKpAGGRD 108 79**************************.8899998*******43..467899**99887554.33323245589966678* PP NAM 90 kevlsk....kgelvglkktLvfy..kgrapkge.ktdWvmheyrl 128 k+v+++ +++lvg+kk +vf +g+ap + + Wvmhey+l OPUNC08G19870.2 109 KPVVASsrcgGSHLVGVKKGMVFVprQGKAPAAAaGSCWVMHEYSL 154 *99888988889******98888887652688****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-41	14	178	IPR003441	NAC domain
PROSITE profile	PS51005	42.534	19	178	IPR003441	NAC domain
Pfam	PF02365	1.9E-20	20	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MMERAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGENYFFAVR PAASGGGRCR RQQVTASGGC WKPAGGRDKP VVASSRCGGS 120 HLVGVKKGMV FVPRQGKAPA AAAGSCWVMH EYSLALPMHK KGCLAEAEEW VVCRIFQRSS 180 SSSRSPRRPD NDVRQTMPAG AEFGRSPSPS SSPSSSQSSC VTSSSDQEEV SSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-31	19	184	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-31	19	184	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-31	19	184	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-31	19	184	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	19	184	20	174	NAC domain-containing protein 19
3swm_B	1e-30	19	184	20	174	NAC domain-containing protein 19
3swm_C	1e-30	19	184	20	174	NAC domain-containing protein 19
3swm_D	1e-30	19	184	20	174	NAC domain-containing protein 19
3swp_A	1e-30	19	184	20	174	NAC domain-containing protein 19
3swp_B	1e-30	19	184	20	174	NAC domain-containing protein 19
3swp_C	1e-30	19	184	20	174	NAC domain-containing protein 19
3swp_D	1e-30	19	184	20	174	NAC domain-containing protein 19
4dul_A	8e-31	19	184	17	171	NAC domain-containing protein 19
4dul_B	8e-31	19	184	17	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ690249	0.0	KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659635.1	1e-112	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A0E0LXC7	1e-168	A0A0E0LXC7_ORYPU; Uncharacterized protein
STRING	OPUNC08G19870.1	1e-166	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-38	NAC domain containing protein 83