PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G19870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 25371.8 Da PI: 9.6837 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.9 | 8.7e-32 | 19 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr...atksgyWk.atgkd 89 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ e yfF+ r ++ g+ +r +++ g Wk a g+d OPUNC08G19870.1 19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGENYFFAVRPAASGGGR-CRRqqvTASGGCWKpAGGRD 108 79****************************.8899998***********43..467899******99887554.333232455899**66678* PP NAM 90 kevlsk....kgelvglkktLvfy..kgrapkge.ktdWvmheyrl 128 k+v+++ +++lvg+kk +vf +g+ap + + Wvmhey+l OPUNC08G19870.1 109 KPVVASsrcgGSHLVGVKKGMVFVprQGKAPAAAaGSCWVMHEYSL 154 ***99888988889**********98888887652688******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-41 | 14 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.534 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-20 | 20 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MMERAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGENYFFAVR PAASGGGRCR RQQVTASGGC WKPAGGRDKP VVASSRCGGS 120 HLVGVKKGMV FVPRQGKAPA AAAGSCWVMH EYSLALPMHK KGCLAEAEEW VVCRIFQRSS 180 SSSRSPRRPD NDVRQTMPAG AEFGRSPSPS SSPSSSQSSC VTSSSDQEEC NVTGRKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-30 | 19 | 184 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ690249 | 0.0 | KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659635.1 | 1e-111 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0E0LXC6 | 1e-172 | A0A0E0LXC6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G19870.1 | 1e-173 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-38 | NAC domain containing protein 83 |