PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G18850.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1069aa    MW: 118506 Da    PI: 6.5373
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G18850.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-2297198199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OPUNC08G18850.3  97 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 186
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  OPUNC08G18850.3 187 AKQQLLLGIRRA 198
                      677789999997 PP
2Auxin_resp116.62.2e-38223306183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++
  OPUNC08G18850.3 223 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 306
                      79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-4287226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-4090212IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-1896186No hitNo description
SMARTSM010191.5E-2097199IPR003340B3 DNA binding domain
PROSITE profilePS5086311.64697199IPR003340B3 DNA binding domain
PfamPF023621.6E-2097198IPR003340B3 DNA binding domain
PfamPF065074.5E-33223306IPR010525Auxin response factor
PfamPF023091.7E-59521030IPR033389AUX/IAA domain
PROSITE profilePS5174520.7179611044IPR000270PB1 domain
SuperFamilySSF542776.38E-59731031No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MASPGGGGGE EGEGRGVAKV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQADPDTDEV  60
YARMTLQPVS NVTQCDKETL LASELALKQT RPQTEFFCKT LTASDTSTHG GFSVPRRAAE  120
RIFPRLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLLAGDS  180
VLFIRDAKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SQFTIYYNPR  240
ASPSEFVIPF AKYQKAVYGN QLSLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKTS  300
HWRNIQVAWD EAAPSERRTR VSLWEIEPII APFFIYPSPL FTAKRPRLPG MTDEDTEMDG  360
LLKRAMPWLG EEICKKDLSI QNSVVPGLNL AQWMNMQHNS SLPGTVVQPE LLNSLSGKPV  420
QNLAAADLSR QISFHPQFLQ QNNIQFNTAL VPQQNQQTEQ LAKVIATPNQ LGSVIIPQKV  480
VQDCNLEQRQ HVVNQPVQGS QPNINIAQPQ LVVQAQLQQP QVILQAQLQQ PQVVVQAQLQ  540
QTQPSVQSHT VLQGGLQQIQ LLQQQQPHVQ HQQIPQQLQH HQQQTQQLQP VQQVQQSVQE  600
HQQIKIQPVH VSTDASLNTQ VADHQMKLQL LKALQPQQPL ISEQQKMLLD LQQQMINSQS  660
APQQCVTNQA ISLHNSNTVQ YPTQGKVQSH QVQDLTGNVI PNSKSDIVTS MGASSLHAAG  720
GRQLLKTDDV PSTSTSPSTN SNPVLLQSIP SSSKNQSLTT AGKTSQSSVV LGPTIEQDTK  780
PYQNVKQTVM IPKTTEQRPA AGQDCINNNP QMDYLDTSSS ATSVCLSQAD GSLQQNFPPS  840
SFHQHHLLKD TVPDSEFEVT DPRNNLLFGV NIDGQLGLPL NADLLANDIE TDKYMDQLPG  900
NGISNFISSK DSQQELSSSM ISHSFGVADM AFNSIDSAIN DTPFLNRNSR SAAGPAHQRM  960
RTYTKVHKRG AVGRSIDINR YSGYDELKHD VARMFGIEGQ LGDQNRVGWK LVYEDHEKDV  1020
LLVGDDPWEI LSPQEEMQMR LVGDFGDSFL PNQACSSSDG GHPWRITGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1412032751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0E0LWZ40.0A0A0E0LWZ4_ORYPU; Auxin response factor
STRINGOPUNC08G18850.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]