PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC08G18240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 36922.6 Da PI: 7.0283 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 4.9e-53 | 24 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yL+ kv + + v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+ev+ OPUNC08G18240.1 24 LPPGFRFHPTDEELVTFYLASKVFNGACCG-GVdIAEVDLNRCEPWELPETARMGEKEWYFFSLRDRKYPTGPRTNRATNTGYWKATGKDREVV 116 79*************************888.455***************988999*************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+l+g+kktLvfykgrap+gekt+Wv+heyrl OPUNC08G18240.1 117 NAaTGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 152 9878899***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-63 | 15 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.369 | 24 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 25 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MGDALWEMLA EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLASKVFNGA CCGGVDIAEV 60 DLNRCEPWEL PETARMGEKE WYFFSLRDRK YPTGPRTNRA TNTGYWKATG KDREVVNAAT 120 GALIGMKKTL VFYKGRAPRG EKTKWVLHEY RLDGDFAAAR RSSKEEWVIC RIFHKVGDQY 180 SKLMMMKSPA SYYLPVSHHP SSIFHDLPPV PFPNPSLVHF HHDLPTTFHS PLQNSHAANK 240 NSSFSSNNGD FDFSNEPNTT NSSNHTACNG AMAAAAAAFP SFSCATVTGK GGPPVQLGVN 300 AGQQEPPPPP PTWMDAYLQH SGFIYEMGPP AVPRGA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 24 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 24 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 24 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 24 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 21 | 175 | 17 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 24 | 175 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 24 | 175 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP006049 | 0.0 | AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648828.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 2e-85 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0E0LWS2 | 0.0 | A0A0E0LWS2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G18240.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11237 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76420.1 | 3e-85 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|