PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G18190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 652aa    MW: 67637.4 Da    PI: 9.896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G18190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-103076444
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrw 44
                     W t Ed+ll++av ++G+ +W+++a++m+       g t+  c++r+
  OPUNC08G18190.1 30 WGTSEDLLLACAVSRHGTASWDAVAKEMQsrcpsaAGFTPATCRLRF 76
                     9****************************555555555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7E-62682IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-52882IPR009057Homeodomain-like
PROSITE profilePS500906.6553080IPR017877Myb-like domain
PfamPF002493.0E-93077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-53083IPR009057Homeodomain-like
CDDcd001671.75E-63079No hitNo description
Gene3DG3DSA:1.20.920.102.5E-13285421IPR001487Bromodomain
SMARTSM002974.1E-9291409IPR001487Bromodomain
SuperFamilySSF473703.53E-14291406IPR001487Bromodomain
PfamPF004391.7E-7310393IPR001487Bromodomain
PROSITE profilePS500148.994310390IPR001487Bromodomain
CDDcd043693.99E-13313404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MTARSGDPGV SPESSSAAAA AGAGAGAEIW GTSEDLLLAC AVSRHGTASW DAVAKEMQSR  60
CPSAAGFTPA TCRLRFRVLH RRFSGGGGVT AENEDTGGEE EPDAAAVAGW VEELRKLRVA  120
ELRREVEKYD LSIGSLQSKV KRLTEERERS ISGETKPAAA AKEEEGEEDV RKGSPEEAGA  180
VEDRVSGHES GRSCKESNSS DLKRPENDPA AAADDDRETG EEAAAAAASA GEVALKEEAS  240
GESVAGSKEA EAEKESSDVQ SSASPSRRRR LKGGGGEEAE AEEASPSPSV SVPLPAAEAE  300
PLVAFLESVR TSKAGAVFER RLESQEGERY SGTIRRHVDL EMVQSKLVGG AAAAAAAAAM  360
CYASASEFYR DMMLLCTNAL VFFPRGSPEH AAAIQLRALV SKQISKDRQP PAGKAPAAAE  420
AKKPKADADI AGPLLEKAPI IVCRKRSSIA KAAAAAAKGE KAEKAEKEKK DGGEEKKKAV  480
ATMTTVTAAA AAKDKKARGM RTNKSRGPAR NQKMVKVSES SEGTKKSDKK GGGGGGGSSS  540
SAAAAGGVAK KRNAVDFLNR MNQNGSPSTE RVSLLETLKL SVATEQQKKS SSSSGKGDGR  600
KEAGGSGSKK GAASTPPGRR IGRPPKRAAA PPTPPPSKRA KDDKPTRKRG KK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012540.0AK101254.1 Oryza sativa Japonica Group cDNA clone:J033032F20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650505.10.0uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1
TrEMBLA0A0E0LWR70.0A0A0E0LWR7_ORYPU; Uncharacterized protein
STRINGOPUNC08G18190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.15e-29DNA-binding bromodomain-containing protein