PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G18020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 236aa    MW: 24817.7 Da    PI: 9.4718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G18020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13166211655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  OPUNC08G18020.1 166 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 211
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-13164215No hitNo description
Gene3DG3DSA:4.10.280.109.4E-16165226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDNGYGSMLR AGMAAAAGGG SGGVGFRNGT NAAAADSPGG SGGRLKGQLS FSSRQGSLMS  60
QISEMGSEEL GGSSPEGGGG GRGYLSGYPM SSGWEESSLM SESISGVKRQ RDSSEPPQNG  120
GGGLAHQFSL PKTSSEMAAI EKFLQFQDAV PCKIRAKRGC ATHPRSIAER VRRTRISERI  180
RKLQELVPNM DKQTNTADML DLAVDYIKDL QKQVKGLNDS RANCTCSASK HQQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574744.11e-134transcription factor bHLH130
SwissprotQ66GR36e-60BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0E0LWP71e-171A0A0E0LWP7_ORYPU; Uncharacterized protein
STRINGOPUNC08G18020.21e-172(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]