PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G17390.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 683aa    MW: 73699.8 Da    PI: 7.4437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G17390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31267323259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C+vkkkve+s+ d++++ei+Y+g+H h+
  OPUNC08G17390.1 267 EDGYNWRKYGQKQVKNSEHPRSYYKCTYPNCSVKKKVEHSQ-DGQITEIVYKGSHSHP 323
                      8***************************************9.***************7 PP
2WRKY104.84.6e-33479537159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C+v+k+vers++d k v++tYeg+Hnhe
  OPUNC08G17390.1 479 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPACSVRKHVERSSHDLKSVITTYEGKHNHE 537
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28262325IPR003657WRKY domain
SuperFamilySSF1182901.09E-25264325IPR003657WRKY domain
SMARTSM007744.3E-35266324IPR003657WRKY domain
PROSITE profilePS5081121.712267325IPR003657WRKY domain
PfamPF031062.0E-24267323IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36464539IPR003657WRKY domain
SuperFamilySSF1182901.96E-28471539IPR003657WRKY domain
PROSITE profilePS5081136.805474539IPR003657WRKY domain
SMARTSM007741.5E-37479538IPR003657WRKY domain
PfamPF031069.4E-25480537IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MDDWMLPSPS PRTLMSSFLN EEFSSGPFSD IFGDNGSNKH QDGLGKSKAF VDSSREETAQ  60
LAKKFESNFF GANQKSSSNG CLSERMAART GFGVLKIDTS RVGYSAPIRS PVTIPPGVSP  120
RELLESPVFL PNAIAQPSPT TGKLPFLMPS NVKPSIPKKT EDETRHDRVF FFQPILGSKP  180
PTFPVAEKGF SVNHQNQTSV TDNHQELNLQ SSSTAAKDFA SATIVKPKTS DSMLHNDDHP  240
SPANDQGESA TNKNEEYSSD LIITPAEDGY NWRKYGQKQV KNSEHPRSYY KCTYPNCSVK  300
KKVEHSQDGQ ITEIVYKGSH SHPLPSSNRR PGVPCSHFND LKGDHSEKFG SKSGEATATS  360
WENAADGHLQ DVHSEVLETK LPASITTTEH ADKSVMDKQE AVDISSMLSN EEDDRLTHCA  420
PLSLGFDAND DDAEHKRRKM DVYAATSTST NAIDIGAVAS RAVREPRVVV QTTSDVDILD  480
DGYRWRKYGQ KVVKGNPNPR SYYKCTHPAC SVRKHVERSS HDLKSVITTY EGKHNHEVPA  540
ARNSGHPSSG SAAAPQATNG LLHRTPEPAQ GGSFAQFGDH AAAAAAAYGS AAGNRPADQF  600
GAGATAAGFS FGMLPRSIAT PAPSPVIAVP AQTAGRPPAM QGYPGLVLPR GEMKVNLLPQ  660
SGNAGAAASQ QLMGRLPKQH PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35267540878Probable WRKY transcription factor 4
2lex_A2e-35267540878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0LWG40.0A0A0E0LWG4_ORYPU; Uncharacterized protein
STRINGOPUNC08G17390.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-115WRKY DNA-binding protein 2