PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G16150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 286aa MW: 29531 Da PI: 7.0575 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.6 | 2.7e-32 | 58 | 111 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ OPUNC08G16150.1 58 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 111 79*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.7E-29 | 58 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.9E-30 | 59 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-25 | 59 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.963 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.02E-20 | 212 | 283 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-32 | 214 | 284 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.8E-26 | 222 | 278 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDFDEHDEGD GDEEMPPMPL SSGYDAPMQP GLGGVGVPKP GSGGGGGGGG GGGGGGGARY 60 RECLKNHAVG IGGHAVDGCG EFMAAGEEGS IDALRCAACG CHRNFHRKES DSPTGVGPAE 120 PSAVSPAAIS AYGASPHHQF SPYYRTPAGY LHHQQHQMAA AAAAAAAAAG GYPQRPLALP 180 STSHSGRDEG DDMSGMVGPM VIGPMVGMSL GSAGPSGSGS GKKRFRTKFT QEQKDKMLAF 240 AERLGWRIQK HDEAAVQQFC EEVCVKRHVL KVWMHNNKHT LGKKAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-29 | 223 | 280 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109528 | 0.0 | AK109528.1 Oryza sativa Japonica Group cDNA clone:002-116-C04, full insert sequence. | |||
GenBank | AP004643 | 0.0 | AP004643.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1113_A10. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695882.1 | 1e-175 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | A2YWA6 | 1e-155 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 1e-155 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0E0LW02 | 0.0 | A0A0E0LW02_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G16150.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-60 | homeobox protein 22 |
Publications ? help Back to Top | |||
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