PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G16060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 18261.8 Da PI: 4.9668 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++e+de l ++v+++G +W++I r+++ gR++k+c++rw + OPUNC08G16060.1 12 RGSWSPEDDEALRRLVERHGALNWTAIRREIP-GRSGKSCRLRWCNQ 57 89******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.717 | 7 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-16 | 11 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.04E-19 | 13 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 13 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-15 | 14 | 56 | No hit | No description |
Pfam | PF13921 | 2.7E-17 | 15 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGGVEADCDR IRGSWSPEDD EALRRLVERH GALNWTAIRR EIPGRSGKSC RLRWCNQLSP 60 QVKRRPFTAE EDAKLQWRLR RAAARCGCRV SVAMDVAPPA TSSRSRGTIA SRAAASKSHR 120 AAGQSSSRTQ SFSDAQNNDE DQQEDEEDDD DEQTEDDTEV QQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-14 | 9 | 72 | 4 | 67 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105817 | 2e-85 | AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence. | |||
GenBank | AK121564 | 2e-85 | AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence. | |||
GenBank | AP003573 | 2e-85 | AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01. | |||
GenBank | AP014962 | 2e-85 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 2e-85 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CT833918 | 2e-85 | CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence. | |||
GenBank | CU406298 | 2e-85 | CU406298.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110G10, full insert sequence. | |||
GenBank | CU406777 | 2e-85 | CU406777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108L17, full insert sequence. | |||
GenBank | CU406904 | 2e-85 | CU406904.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641187.1 | 8e-42 | transcription factor MYB77 | ||||
Refseq | XP_015693651.1 | 2e-43 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 6e-30 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A0E0LVZ0 | 1e-113 | A0A0E0LVZ0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G16060.1 | 1e-114 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP30639 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-31 | myb domain protein r1 |