PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G15760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 29172.4 Da PI: 4.8272 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.7e-20 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g OPUNC08G15760.1 132 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 181 8********.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.5E-37 | 132 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.277 | 132 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 132 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 132 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-23 | 132 | 190 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-11 | 133 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.87E-29 | 135 | 189 | No hit | No description |
PRINTS | PR00367 | 1.7E-11 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGGNQEYMIR FDGHIDDASP SSATAEPPPQ PPPPPPPPFA GRAITVEREQ SVIVAALLHV 60 ISGYRTPPPE VFPAARAEVC GVCGMDQCLG CEFFAGESGV VSFDGVDKVV AAAAAAAAPA 120 AGQRRRRKKK NKYRGVRQRP WGKWAAEIRD PRRAVRKWLG TFDTAEEAAR AYDRAAVEFR 180 GPRAKLNFPF PEQLPMHDDS NGDASAAAKS DTLSPSPRSA DADEQVEQTG WPQGGGGGET 240 ADQLWEGLQD LMQLDEGELS WFPQSSDSWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 129 | 190 | 2 | 64 | ATERF1 |
3gcc_A | 5e-21 | 129 | 190 | 2 | 64 | ATERF1 |
5wx9_A | 1e-20 | 132 | 194 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | RRRRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004399 | 0.0 | AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649367.1 | 1e-147 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 8e-31 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0E0LVV6 | 0.0 | A0A0E0LVV6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G15760.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-23 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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