PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G14310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 421aa    MW: 45845.2 Da    PI: 5.0849
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G14310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.1e-1152108256
              AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g+
  OPUNC08G14310.1  52 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAAHAYDLAALKYWGH 108
                      58******************77779888877777999999**************997 PP
2AP248.71.9e-15150201155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  OPUNC08G14310.1 150 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 201
                      89****99**********99966...3.6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-1451117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-1252116IPR001471AP2/ERF domain
SMARTSM003803.8E-1952121IPR001471AP2/ERF domain
PROSITE profilePS5103218.18952115IPR001471AP2/ERF domain
PfamPF008471.8E-853108IPR001471AP2/ERF domain
PRINTSPR003674.4E-55364IPR001471AP2/ERF domain
CDDcd000183.91E-23150211No hitNo description
PfamPF008476.0E-10150201IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17150211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-18151209IPR001471AP2/ERF domain
PROSITE profilePS5103217.82151209IPR001471AP2/ERF domain
SMARTSM003802.0E-26151215IPR001471AP2/ERF domain
PRINTSPR003674.4E-5191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAKRRGNGET AAASSDDSSS GAGGGGKVEP RRRQKRPRRS APRDCPSQRS SAFRGVTRHR  60
WTGRFEAHLW DKNTWNESQS KKGRQGAYDG EEAAAHAYDL AALKYWGHDT VLNFPLSTYD  120
EELKEMEGQS REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGKWEARIGR VFGNKYLYLG  180
TYATQEEAAV AYDIAAIEHR GPNAVTNFDI NLYIRWYHSS CRSSSAAATD TGDDMAAQNP  240
AAIIEYDDFD EAIAAALRDD DEQPSPSPST TLQLQTADDD DLVAQLPPQL RPLAGAASTS  300
PIGLLLRSPK FKEIIEQAAA AASSGSSSST DSPSSSSSSL SPSPSPSPLP SPPLQQPTVL  360
KDDQYNVDMS SVAAARCSFP DDVQTYFGLD DDGFGYPEVD TFLFGDLGAY AAPMFQFELD  420
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588200.0HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0E0LVC90.0A0A0E0LVC9_ORYPU; Uncharacterized protein
STRINGOPUNC08G14310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.26e-88AP2 family protein