PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G11130.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 284aa    MW: 30485.6 Da    PI: 5.9179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G11130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-09103144550
              AP2   5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50 
                      GV+++   grW++  rd      +   r +lg+f ++eeA+ a++a+ 
  OPUNC08G11130.1 103 GVYQRQ-PGRWAVDFRDH-----QlkVRQWLGTFPSEEEARTAYDAFE 144
                      9**998.9******8884.....2449*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.523100157IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-9103148IPR016177DNA-binding domain
SMARTSM003800.0012103150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-11103150IPR001471AP2/ERF domain
PfamPF008477.0E-6103144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVAFRRVRIS YSDPDATDSD SDSADAGDHD ISGSSSTNAT ARRKVIVISL SQCGHRRRRR  60
SEIPAAVVEA AEDCPSSSDR MRRGAVAAAR SASVATKKGS RGGVYQRQPG RWAVDFRDHQ  120
LKVRQWLGTF PSEEEARTAY DAFEVQVRAS SLAVAIAPSP ARVKIQQTAA PRRASGRRKK  180
PQPEDHPTAA TTTTTTESSQ ATASTSPSSR VAPPSSSASA ATPPLVVDPF LGEEDHLADD  240
DDHFGFGLAD LAHLPLPFLD GEGDDMDFKL SDSDDLSLFD IGFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14159RRKVIVISLSQCGHRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-113CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875765.13e-93ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0LU730.0A0A0E0LU73_ORYPU; Uncharacterized protein
STRINGOPUNC08G11130.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-10C-repeat-binding factor 4