PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G10040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 429aa    MW: 48019.2 Da    PI: 4.5541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G10040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.51.3e-1991371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                      l+pGf+F+P+de+lv+++L + +++ +++l   + + d  +v Pw+L  ++ +++e++ yf +++d +     r+ r+ +  +g+W ++  +++
  OPUNC08G10040.1   9 LTPGFKFEPSDEQLVQFFLLPYLRDLPVPLGGLVIRDDPRSVPPWKLFaRNGRGDEEDAYFLAPADGEG----RQARTCDggRGRWITQRLERT 98 
                      579***************************8888888**********8334445666779988887753....555543323899*99988777 PP

              NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +   ++++v  k+ L ++ g+ + g +t Wvmhey++
  OPUNC08G10040.1  99 GDLRlvgGEAVVFEKHRLNYHAGEGRCG-STGWVMHEYAV 137
                      6655666888899********9999997.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-273155IPR003441NAC domain
PROSITE profilePS5100525.6469155IPR003441NAC domain
PfamPF023653.4E-1411136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAAAKMTGLT PGFKFEPSDE QLVQFFLLPY LRDLPVPLGG LVIRDDPRSV PPWKLFARNG  60
RGDEEDAYFL APADGEGRQA RTCDGGRGRW ITQRLERTGD LRLVGGEAVV FEKHRLNYHA  120
GEGRCGSTGW VMHEYAVVKP VALGARHRAC HIAFTGHGQK RKRVPDGYVD VEDDGSKAST  180
SAAAAIPPSS TAMSTCPPLT CPSNAAYNQV YHIPPEQTNQ QNFPVEHNVQ IQQHAYYQSQ  240
YQEHYSDEEK NLLQQIKQEQ YYDQQNCFLP DQGNQEVYYD EQQNFLLPEH QCSQEQYSNH  300
DQQDCVMPEQ HNQELHGYNN EQAYLLPEPI DQEEQALFIG GAPEHEQPLM STSQQVLLDH  360
DEELLPVGVN GVAIPPQDAA VESNDDSGRG AVQATEAPAV KMTAEEKKWF MQELLTAGCL  420
SGPLLFDQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047590.0AP004759.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0670E08.
GenBankAP0054900.0AP005490.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649258.10.0uncharacterized protein LOC107275324
TrEMBLA0A0E0LTU30.0A0A0E0LTU3_ORYPU; Uncharacterized protein
STRINGOPUNC08G10040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-13NAC domain containing protein 53