PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G02750.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 332aa    MW: 35508.4 Da    PI: 10.5572
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G02750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-14100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  OPUNC08G02750.1 100 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.43193149IPR017930Myb domain
SuperFamilySSF466891.0E-1794149IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1896148IPR006447Myb domain, plants
SMARTSM007173.5E-1197147IPR001005SANT/Myb domain
PfamPF002494.7E-12100144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-12100143IPR009057Homeodomain-like
CDDcd001677.22E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MPQDSRPAAM RLFGVTISPA AAEPEPEPDP SDRRDPSPRP AVAVREDAMR KCKSMGNLAA  60
AAAAAAGDAG GSGDGYLSDG GLLQSSGKRR RAQERKKAVP WTEEEHRTFL AGLEKLGKGD  120
WRGISKNFVT TRTPTQVASH AQKYFLRQTN PNKKKRRSSL FDMMATDMSP APNCPILPPS  180
MGKLHDMVAM TKQLQNSSLE GVSSSSTVNL APQVARDLPP PIPSFKATNV DSSLSKMNHM  240
DGFLRAPMLF RPIPRITEGA SSSAPATASI ADLEFQANLT ASSNALFASP RRKPKKADPP  300
AEKDLDLTVA PPSQQTRASI SSQNAVGVIQ VV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063310.0AK106331.1 Oryza sativa Japonica Group cDNA clone:002-101-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648291.10.0transcription factor MYBS3-like isoform X1
TrEMBLA0A0E0LR820.0A0A0E0LR82_ORYPU; Uncharacterized protein
STRINGOPUNC08G02750.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-37MYB_related family protein