PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G25060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 37134 Da PI: 7.732 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.1e-53 | 12 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++++ OPUNC07G25060.1 12 LPPGFRFHPTDEELILHYLRNRAAAGQCPV-PIIADVDIYKFDPWDLPPKAAYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHD 104 79****************************.88**************967777899*************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl OPUNC07G25060.1 105 SaTGESVGVKKALVFYRGRPPKGTKTSWIMHEYRL 139 988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 3 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.097 | 12 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEMTMSSAAT SLPPGFRFHP TDEELILHYL RNRAAAGQCP VPIIADVDIY KFDPWDLPPK 60 AAYGESEWYF FSPRDRKYPN GIRPNRAAGS GYWKATGTDK PIHDSATGES VGVKKALVFY 120 RGRPPKGTKT SWIMHEYRLA AASYKPSSSS RFRNVSMRLD DWVLCRIYKK SGQASPMLPP 180 LAADYDHDEP SGVLDDAYNF YAPPMISSTL IPKLPKIPSI SELFDEHALA QIFDATADPP 240 ADHHHHQHAL AVHSSLNQLL GVGDNFLAEC YSSTTPPATV AGSKRKASPG EYAGGGHTPA 300 KRLNGSCFDV APQSVVGGLQ ATPSSVLAGL NHQMLPPQLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-73 | 11 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-73 | 11 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-73 | 11 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-73 | 11 | 175 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 8e-73 | 11 | 175 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-73 | 11 | 175 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-73 | 11 | 175 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT829369 | 0.0 | CT829369.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA056N06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647490.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | O49255 | 2e-84 | NAC29_ARATH; NAC transcription factor 29 | ||||
TrEMBL | A0A0E0LPW4 | 0.0 | A0A0E0LPW4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G25060.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-86 | NAC-like, activated by AP3/PI |