PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G21540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 539aa    MW: 59650.4 Da    PI: 4.6579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G21540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-132973348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eEd  l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  OPUNC07G21540.1 29 SWSAEEDNVLRTQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 73
                     6****************************9.**************7 PP
2Myb_DNA-binding41.62.8e-1379122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd+ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  OPUNC07G21540.1  79 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 122
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.8642277IPR017930Myb domain
SuperFamilySSF466892.96E-2626120IPR009057Homeodomain-like
SMARTSM007178.2E-132675IPR001005SANT/Myb domain
CDDcd001673.40E-132973No hitNo description
Gene3DG3DSA:1.10.10.601.9E-183080IPR009057Homeodomain-like
PfamPF139212.1E-143089No hitNo description
PROSITE profilePS5129417.36778128IPR017930Myb domain
SMARTSM007173.5E-1378126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-1981127IPR009057Homeodomain-like
CDDcd001671.74E-982123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MATGPDLSSP ASAEAPLASA AKKDRHIVSW SAEEDNVLRT QIALHGTDNW TIIAAQFKDK  60
TARQCRRRWY NYLNSECKKG GWSREEDLLL CEAQKVLGNK WTEIAKVVSG RTDNAVKNRF  120
STLCKRRAKD DELFKENGSL CSSANAKRVL AQTECLTSGA GGSAPPIKQM RPCNSDFKEN  180
MTPNVRLVGQ DKSTQQDSRQ PLTIVYQNNQ DNTNTMDTQN LVAKTAAKQL FGGEQNCVKH  240
EGNFLNKDDP KVATLLQRAD LLCSLATKIN TENTSQSMDE AWQQLQHHLD KKDDNDMSES  300
STSGMASLLE DLDDLIVDPY ENEEEEDQKL REQTEQIDVE NRQNSSQTSM EVTSQMVPNN  360
KMEDCPNDKS TEDNNMEPCP AKPGADIPTS ENLTEAAIED SLLQCVEYSS PVHTVIQAKT  420
DAEIAASKNL SEVLEHNRLQ CIKLASPAQT TTPAEANAET PVSEKLSEVV KCNNPPCMEF  480
TSPAHTVPTF LPYADDMPTP KFTASERNFL LSVLELTSPG SRPDTSQQPS CKRALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-283012710107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647542.10.0transcription factor MYB124 isoform X2
TrEMBLA0A0E0LNL60.0A0A0E0LNL6_ORYPU; Uncharacterized protein
STRINGOPUNC07G21540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-80MYB family protein