PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G19040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 615aa    MW: 65787.1 Da    PI: 6.2734
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G19040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32234291260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  OPUNC07G19040.1 234 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 291
                      8****************************************.***************85 PP
2WRKY106.41.5e-33407465159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  OPUNC07G19040.1 407 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 465
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-28227292IPR003657WRKY domain
PROSITE profilePS5081123.801228292IPR003657WRKY domain
SuperFamilySSF1182908.24E-25232292IPR003657WRKY domain
SMARTSM007743.6E-35233291IPR003657WRKY domain
PfamPF031062.2E-24234290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37392467IPR003657WRKY domain
SuperFamilySSF1182901.44E-29399467IPR003657WRKY domain
PROSITE profilePS5081138.526402467IPR003657WRKY domain
SMARTSM007741.7E-39407466IPR003657WRKY domain
PfamPF031062.4E-26408465IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MADSPNPSSG DYPAGVGGSP EKQPPVDRRV AALAAAGSGA RYKAMSPARL PISREPCLTI  60
PAGFSPSALL ESPVLLTNFK VEPSPTTGTL SMAAIMSKSA NPDILPSPRD KSSGSTHEDG  120
GSRDFEFKPH LNSSSQLAAP AINDPKKHES CMKNESLNTA PSSDDMMIDN IPPCSRESTL  180
AVTVSSAPSQ LVGMVGLTDS APAEVGTSEL HQMNSSGNAM QESQPESVAE KSAEDGYNWR  240
KYGQKHVKGS ENPRSYYKCT HPNCEVKKLL ERSLDGQITE VVYKGRHNHP KPQPNRRLSA  300
GAVPPSQGEE RYDGVATTDD KSSNVLSNLG NAVHTAGVIE PVPGSASDDE NDAGGGRPYP  360
GDDAVEDDDL ESKRRKMESA AIDAALMGKP NREPRVVVQT VSEVDILDDG YRWRKYGQKV  420
VKGNPNPRSY YKCTNTGCPV RKHVERASHD PKSVITTYEG KHNHEVPASR NASHDMSTPP  480
MKPVHPINSN MQGLGGMMRA CEPRTFPNQY SQAAESDTIS LDLGVGISPN HSDATNQLQS  540
SVSDQMQYQM QPMGSVYSTM GLPAMAMPTM AGNAASSIYG SREEKPSEGF TFKATPMDHS  600
ANLCYSTAGN LVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37234468878Probable WRKY transcription factor 4
2lex_A9e-37234468878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705370.0AK070537.1 Oryza sativa Japonica Group cDNA clone:J023062H03, full insert sequence.
GenBankAY3418500.0AY341850.1 Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646742.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0E0LMQ40.0A0A0E0LMQ4_ORYPU; Uncharacterized protein
STRINGOPUNC07G19040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-129WRKY family protein