PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G07690.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 46831.2 Da PI: 7.0559 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 115 | 164 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OPUNC07G07690.2 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.5 | 1.6e-13 | 207 | 257 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g OPUNC07G07690.2 207 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 257 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.04E-16 | 115 | 173 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-9 | 115 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-17 | 116 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 116 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-31 | 116 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.41E-11 | 116 | 171 | No hit | No description |
CDD | cd00018 | 1.31E-26 | 207 | 267 | No hit | No description |
SuperFamily | SSF54171 | 6.47E-17 | 207 | 266 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-9 | 207 | 257 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-16 | 208 | 265 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.107 | 208 | 265 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-33 | 208 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 209 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 247 | 267 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MVLDLNVESP GGSAATSSSS TPPPDGGGFR FDLLGGSPDE DGCSPPVMTR QLFPSPAAAF 60 ALAAVDGSPP TTMTPAAAGE GSWPRRAADL GVVAQNQRSP AGGKKSRRGP RSRSSQYRGV 120 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGLDADIN FNLNDYEDDL 180 KQMRNWTKEE FVHILRRQST GFARGSSKYR GVTLHKCGRW EARMGQLLGK KYIYLGLFDS 240 EIEAARAYDR AAIRFNGREA VTNFDPSSYD GDVLPETDNE AVVDGDIIDL NLRISQPNVH 300 ELKSDGTLTG FQLNCDSPEA SSSVVTQPVS PQWPVLPQGT SIASQHPHLY ASPCPGVFVN 360 LREVPMEKRP ELGPQSFPTW SWQMQGSTLP LLPTAASSGF STGTVADAAL VPSSRPHPFP 420 GHHQFYFPPT A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831975 | 0.0 | CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647891.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q8H443 | 0.0 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A0E0LIR2 | 0.0 | A0A0E0LIR2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G07690.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 3e-91 | related to AP2.7 |
Publications ? help Back to Top | |||
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