PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G07160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 25296.4 Da PI: 11.0216 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.3e-09 | 146 | 180 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtl 37 WT+eEd +l++a++ + ++ W++I r ++ +Rt+ OPUNC07G07160.1 146 IWTEEEDMKLIKAHQTYDNR-WSAIIRWLPaGRRTP 180 6*******************.******999766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-9 | 144 | 199 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-10 | 145 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.62 | 145 | 180 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.33E-5 | 147 | 180 | No hit | No description |
Pfam | PF00249 | 7.4E-7 | 147 | 180 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVVPATKHSW CSNHRGVPNL GCLVASIGMD PSSFRMPKRD PVTASYNSIS TVQVLPRCLN 60 NSRRKLVASS NGNLRLVKGG CGQGKRMSSD RSINFRFVIF LLGISSFLRQ YNLLLLCSLD 120 CRVLRQMLRH HGDRKWIEIA KSLPGIWTEE EDMKLIKAHQ TYDNRWSAII RWLPAGRRTP 180 CIKNHRNPTK RSLNSKQPLR KKNSEQAAPG QPSHLEEYIF SC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005197 | 2e-68 | AP005197.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0592C06. | |||
GenBank | AP014963 | 2e-68 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 2e-68 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | DQ989628 | 2e-68 | DQ989628.1 Oryza sativa (indica cultivar-group) clone BAC 21O9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645922.1 | 3e-52 | transcription factor MYB118 | ||||
TrEMBL | A0A0E0LIK2 | 1e-164 | A0A0E0LIK2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G07160.1 | 1e-164 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 2e-12 | myb domain protein 118 |