PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G02060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 359aa MW: 40103.2 Da PI: 4.7254 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37 | 4.3e-12 | 13 | 48 | 3 | 38 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 ie+++ r+ t+skRr g++K A+ LS L+da va+ OPUNC07G02060.1 13 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 48 99*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-6 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-5 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.59E-12 | 5 | 47 | No hit | No description |
SuperFamily | SSF55455 | 1.01E-13 | 7 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.456 | 10 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-12 | 13 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-5 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-5 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MARRGRRKGV RYIEEDRDRS LTLSKRRDGL FKLANDLSLL TDASVAICLH DNNKAQFFGA 60 PSVKPIFDAF VSEYPQAEPF ADEQLKAKLT SMQSELVQLE NEEEEKDKKT EESIQRFKKA 120 QEESSGKAKH MFSRVEDLSH DDMRELLDVL LPLQQDFKQR LPPLRRDSKL QIGESSAWAR 180 RQPSCSCFLA SHRPFTPLLP GGTSGVPMIP PPPVPGSPWS HIFPLQPSRF PSPELVPSQQ 240 LPPVSLPQNT VAPPPMHAPL VQQPLTNQSS AVPLLTQWQM RYGDQPPSEV QANTPVEQTQ 300 NDNAVHTPTF SDNFLSELLA DVSDDGIATA EPLCSPPIDD QFLADIDWLA DLDTIDGNL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003742 | 0.0 | AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07. | |||
GenBank | AP004338 | 0.0 | AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882749.1 | 0.0 | uncharacterized protein LOC107277131 | ||||
TrEMBL | A0A0E0LGS7 | 0.0 | A0A0E0LGS7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G02060.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3089 | 22 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-09 | AGAMOUS-like 61 |