PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC07G01880.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 346aa MW: 38241.7 Da PI: 5.0989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G01880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.5	9.6e-48	29	161	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+ +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s OPUNC07G01880.1 29 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICS 121 69*************************.89*********96345556789********************************** PP NAM 95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g +glkk+Lv+y+g+a kg+ktdW+mhe+rl OPUNC07G01880.1 122 AaatataAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 161 86665555555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.816	28	196	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-51	28	196	IPR003441	NAC domain
Pfam	PF02365	6.0E-25	30	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MKRGCEDELG GDVILRGVEG EEDDDDLVLP GFRFHPTDEE LVTFYLRRKI AGKRLSIEII 60 KEMDIYKHDP SDFLKTSTVG SEKEWYFFCL RGRKYRNSIR PNRVTGSGFW KATGIDRPIC 120 SAAATATAAG DCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPPPTSADD HAAGRSSPPP 180 SLQEAEVWTI CRIFQRNITH KKQPQPQLAV AAAAAPQPVP DSTSSITGSL ESDSAGDDVV 240 EYMNTLQPPP PPPQAPASNV NGSYNNQHYF QEQWNSSSNN TTVFQQAAPP PPEPSPPAMA 300 AFGHDQSVLS SPAPSDFYYK DGCNDDIYRM VMELADPSVF YDHIYA

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MKRGCEDELG GDVILRGVEG EEDDDDLVLP GFRFHPTDEE LVTFYLRRKI AGKRLSIEII  60
KEMDIYKHDP SDFLKTSTVG SEKEWYFFCL RGRKYRNSIR PNRVTGSGFW KATGIDRPIC  120
SAAATATAAG DCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPPPPTSADD HAAGRSSPPP  180
SLQEAEVWTI CRIFQRNITH KKQPQPQLAV AAAAAPQPVP DSTSSITGSL ESDSAGDDVV  240
EYMNTLQPPP PPPQAPASNV NGSYNNQHYF QEQWNSSSNN TTVFQQAAPP PPEPSPPAMA  300
AFGHDQSVLS SPAPSDFYYK DGCNDDIYRM VMELADPSVF YDHIYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	30	202	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	30	202	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	30	202	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	30	202	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	30	202	22	174	NAC domain-containing protein 19
3swm_B	1e-43	30	202	22	174	NAC domain-containing protein 19
3swm_C	1e-43	30	202	22	174	NAC domain-containing protein 19
3swm_D	1e-43	30	202	22	174	NAC domain-containing protein 19
3swp_A	1e-43	30	202	22	174	NAC domain-containing protein 19
3swp_B	1e-43	30	202	22	174	NAC domain-containing protein 19
3swp_C	1e-43	30	202	22	174	NAC domain-containing protein 19
3swp_D	1e-43	30	202	22	174	NAC domain-containing protein 19
4dul_A	1e-43	30	202	19	171	NAC domain-containing protein 19
4dul_B	1e-43	30	202	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003829	1e-128	AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBank	AP004314	1e-128	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	1e-128	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	1e-128	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646514.1	0.0	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	2e-80	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0E0LGP4	0.0	A0A0E0LGP4_ORYPU; Uncharacterized protein
STRING	OPUNC07G01880.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-74	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]