PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G15050.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 665aa MW: 75145 Da PI: 6.4652

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G15050.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.9e-08	44	69	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f ++G Ck+G +C ++H+ OPUNC06G15050.2 44 PGEPDCSYFVKFGSCKFGMSCVYNHP 69 5789*********************9 PP
2	zf-CCCH	29.1	1.7e-09	88	114	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ ++G Ck+G +C+F+H+p OPUNC06G15050.2 88 PGEPDCSYYVKFGSCKFGMNCRFNHPP 114 5789*********************96 PP
3	zf-CCCH	34.4	3.8e-11	154	179	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC++++ G+Ck+G +CkF H+ OPUNC06G15050.2 154 PGTGLCSYYMNRGICKFGTNCKFDHP 179 5799*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.001	43	70	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.713	43	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.9E-6	45	69	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.859	87	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	87	114	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-6	89	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.1E-6	153	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.694	153	181	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-6	154	180	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	155	179	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	156	178	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF48371	1.06E-30	323	485	IPR016024	Armadillo-type fold
Gene3D	G3DSA:1.25.40.180	1.3E-32	323	484	IPR016021	MIF4G-like domain
SMART	SM00543	6.1E-11	329	582	IPR003890	MIF4G-like, type 3
Pfam	PF02854	4.4E-24	332	487	IPR003890	MIF4G-like, type 3

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MNSHASAMPQ DDAWFWGPTV GGGETTKPQP VARGKKVEEH PRRPGEPDCS YFVKFGSCKF 60 GMSCVYNHPD PRQHGGDDKQ PEQFPRRPGE PDCSYYVKFG SCKFGMNCRF NHPPRIPVPS 120 QEYFPGNACH GHHHEGKSKV EQVKLNGLGL PLRPGTGLCS YYMNRGICKF GTNCKFDHPD 180 PGSDQEKWVD SSNANQVSSQ PVNPSFQLAE RLSYTRDQLL QLCQNVDVPK NILELCQDIN 240 VVLTGEDKIL GFRAEKNHVQ TPSYKRFDAT DSRDWHSRSA QTHLDNFSEA KEPYALGWKQ 300 EQFNKHDQTS NHFDSKAQSC IISEKDEVLT TLKRILNTLT PKMFDLQKGQ LIETKITSAD 360 ILKDVLNLIF EKVVAEPAFC PTYAQLCSYL NQNLTPFPPE DCDGEKITFK QALSNKCQEI 420 FESDRTVRAE IDKLIGPDQE MEQRDKERVV KLETLGNIHF IRALLKKKLI TNKIIDHIVQ 480 AVMDCGKFRF EPLGKVDLLN IIFEGMLDSD SAGAEPNICV NAMIGGNKSF IAANNVEMTY 540 KNVNRRNEEE ILQKSYNEVP NKSMDPQKNY ADAAFSHLVE NEKPTNLESS VGISRGGCSI 600 SEIMELVVDA GAVEGSDEHF IATLLFIKPE YREIFLTLDT RQGRLGWLKR MYKVKESVGS 660 CFMDS

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MNSHASAMPQ DDAWFWGPTV GGGETTKPQP VARGKKVEEH PRRPGEPDCS YFVKFGSCKF  60
GMSCVYNHPD PRQHGGDDKQ PEQFPRRPGE PDCSYYVKFG SCKFGMNCRF NHPPRIPVPS  120
QEYFPGNACH GHHHEGKSKV EQVKLNGLGL PLRPGTGLCS YYMNRGICKF GTNCKFDHPD  180
PGSDQEKWVD SSNANQVSSQ PVNPSFQLAE RLSYTRDQLL QLCQNVDVPK NILELCQDIN  240
VVLTGEDKIL GFRAEKNHVQ TPSYKRFDAT DSRDWHSRSA QTHLDNFSEA KEPYALGWKQ  300
EQFNKHDQTS NHFDSKAQSC IISEKDEVLT TLKRILNTLT PKMFDLQKGQ LIETKITSAD  360
ILKDVLNLIF EKVVAEPAFC PTYAQLCSYL NQNLTPFPPE DCDGEKITFK QALSNKCQEI  420
FESDRTVRAE IDKLIGPDQE MEQRDKERVV KLETLGNIHF IRALLKKKLI TNKIIDHIVQ  480
AVMDCGKFRF EPLGKVDLLN IIFEGMLDSD SAGAEPNICV NAMIGGNKSF IAANNVEMTY  540
KNVNRRNEEE ILQKSYNEVP NKSMDPQKNY ADAAFSHLVE NEKPTNLESS VGISRGGCSI  600
SEIMELVVDA GAVEGSDEHF IATLLFIKPE YREIFLTLDT RQGRLGWLKR MYKVKESVGS  660
CFMDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hu3_A	2e-14	327	483	10	175	EIF4GII
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101510	0.0	AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641849.1	0.0	zinc finger CCCH domain-containing protein 43
Refseq	XP_025882269.1	0.0	zinc finger CCCH domain-containing protein 43
Swissprot	Q5Z5Q3	0.0	C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A0E0LC38	0.0	A0A0E0LC38_ORYPU; Uncharacterized protein
STRING	OPUNC06G15050.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-25	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]