PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G14520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 325aa    MW: 34521.7 Da    PI: 5.96
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G14520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-07236277955
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       + RR++i +++  L+el+P+ a      K++ +++L +A+ Y+k +q
  OPUNC06G14520.1 236 AKSRREKIGERLRALQELVPSgA------KVDMVSMLDRAISYVKFMQ 277
                      589******************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.40E-10225281No hitNo description
Gene3DG3DSA:4.10.280.105.6E-11225285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-12226287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.373227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4237277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MESMAHLPYK ANPWRTLYPI HICLLVSIPS SSSKYNFCLL AMALVAGDEA MSMSWHDVGV  60
VVDPDEAGTA PFDAAAGYVP SYDQCQYYHH HHHPCTTELI HAGDAGSAVA LEHDVDGWVH  120
AAAAATSPSS SSVLTFDGHG EEHSAVSWMD MDAHATEPQL IGYGLTAATS SSSCCFSSGG  180
FGDSGMVMVT TTPTSAAVSG SHKRARAPAS PSQGAELQEN SKKQRANNKE PQSSAAKSRR  240
EKIGERLRAL QELVPSGAKV DMVSMLDRAI SYVKFMQLQL RVLETDAFWP AADGAAPDIP  300
RAKDALDAII LSSSSPSQMA CPRSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362780.0CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642667.11e-127transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0LBX00.0A0A0E0LBX0_ORYPU; Uncharacterized protein
STRINGOPUNC06G14520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1880188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-35ROOT HAIR DEFECTIVE6