PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G09470.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 662aa    MW: 73904 Da    PI: 10.4612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G09470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.9e-144792348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd  l ++  + G+++W ++a+ m+ +R++ qc++rw+++l
  OPUNC06G09470.1 47 AWTPEEDAALERLAMENGSRHWCLVAAQMPRKRSPVQCRDRWRNHL 92
                     7*****************************99************97 PP
2Myb_DNA-binding43.66.9e-14265310348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+eEd  l ++  + G+++W ++a+ m+ +R++ qc++rw+++l
  OPUNC06G09470.1 265 AWTPEEDAALERLAMENGSRHWCLVAAQMPRKRSPVQCRDRWRNHL 310
                      7*****************************99************97 PP
3Myb_DNA-binding38.43e-12538583348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+e+d  l ++ ++ G+++W ++a+ m+ +R++ qc++rw+++l
  OPUNC06G09470.1 538 AWTPEDDAVLERLARENGSRHWCRVAAQMPSRRSPVQCRDRWRDHL 583
                      7*****************************99***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9834096IPR017930Myb domain
SMARTSM007171.7E-134494IPR001005SANT/Myb domain
SuperFamilySSF466897.86E-2046141IPR009057Homeodomain-like
CDDcd001678.64E-124792No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1747102IPR009057Homeodomain-like
PfamPF002492.1E-134792IPR001005SANT/Myb domain
SMARTSM007170.006497147IPR001005SANT/Myb domain
CDDcd001674.51E-4100144No hitNo description
PROSITE profilePS500907.062100145IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-6103143IPR009057Homeodomain-like
PROSITE profilePS5129417.983258314IPR017930Myb domain
SMARTSM007171.7E-13262312IPR001005SANT/Myb domain
SuperFamilySSF466897.86E-20264359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-17265320IPR009057Homeodomain-like
CDDcd001678.64E-12265310No hitNo description
PfamPF002492.1E-13265310IPR001005SANT/Myb domain
SMARTSM007170.0064315365IPR001005SANT/Myb domain
CDDcd001674.51E-4318362No hitNo description
PROSITE profilePS500907.062318363IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-6321361IPR009057Homeodomain-like
CDDcd001676.80E-4426481No hitNo description
Gene3DG3DSA:1.10.10.607.8E-7427481IPR009057Homeodomain-like
PROSITE profilePS500907.097427482IPR017877Myb-like domain
SMARTSM007170.02434484IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-6436482IPR009057Homeodomain-like
PROSITE profilePS5129417.534531587IPR017930Myb domain
SMARTSM007172.7E-11535585IPR001005SANT/Myb domain
CDDcd001674.98E-10538583No hitNo description
Gene3DG3DSA:1.10.10.604.0E-15538594IPR009057Homeodomain-like
SuperFamilySSF466897.05E-15538607IPR009057Homeodomain-like
PfamPF002497.8E-12538583IPR001005SANT/Myb domain
SMARTSM007171.9588638IPR001005SANT/Myb domain
SuperFamilySSF466898.69E-5590642IPR009057Homeodomain-like
PROSITE profilePS500906.237591636IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4595637IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MSHDMAIMEP SSSSSAAADD QCASAVVTPS SAPPSGRCVA RIRLPPAWTP EEDAALERLA  60
MENGSRHWCL VAAQMPRKRS PVQCRDRWRN HLARDVFHRP FTAADDDELA RLILRPGGGD  120
RWKDISRAVH GRSSRSVKRR WMEIGTSDEL LRKLWHPRSS MLSPAGQDTV MHAVDMELSS  180
SSAAPVFASS SVSPPLGRCV VRIRLPPAWT PEEDAIRSMS HDMAIMEPSS SSSAAADDQC  240
ASAVVTPSSA PPSGRCVARI RLPPAWTPEE DAALERLAME NGSRHWCLVA AQMPRKRSPV  300
QCRDRWRNHL ARDVFHRPFT AADDDELARL ILRPGGGDRW KDISRAVHGR SSRSVKRRWM  360
EIGTSDELLR KLWHPRSSML SPAGQDTVMH AVDMELSSSS AAPVFASSSV SPPLGRCVVR  420
IRLPPAWTPE EDAVLDPFTL ADDDELTRLI LRPGSGDRWK DISRAVHGRS SRSVKRRWME  480
ISTSDELLRK LWHPRSSMLS AAGQDALSSS SAAAAVFASS SVSPPLGRCV VRIRLPPAWT  540
PEDDAVLERL ARENGSRHWC RVAAQMPSRR SPVQCRDRWR DHLARNVFHR PFTATDDAEL  600
ARLCLRLDGD GRWKDISRAV HCRSSRAMKR RWRELRKSDA FLGELWRPLS RPTANPAITT  660
MC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A9e-134836214106MYB21
3osf_D9e-134836214106MYB21
3osg_A9e-134836214106MYB21
3osg_D9e-134836214106MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055270.0AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642266.13e-71transcription factor MYB44
TrEMBLA0A0E0LA520.0A0A0E0LA52_ORYPU; Uncharacterized protein
STRINGOPUNC06G09470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.17e-17myb domain protein r1