PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G07840.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 396aa MW: 39854.9 Da PI: 8.7337

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G07840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.9	5.9e-41	66	245	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ OPUNC06G07840.1 66 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 159 789******************************************************************9999899999999988888888899 PP TCP 89 ....................................kaaksaakskksqksaasalnlak.esr..akarar...are.rtrekmrik 133 + +s+ + s +s + l+++ s a a a+ +r+ r++++m+++ OPUNC06G07840.1 160 glagaphfggaraadawdrvvglgfgggadapssatS--SSSSPLLLSFHSGSVGLDVSPsASTspAAAAANtdlSRKrRWEQEMQQQ 245 9999999999999999999999999999999886422..3333555555555555666654333232222224555555666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-43	70	249	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	72	126	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MDFTGDGGGG RRPNFPLQLL GKKEEQTCST SQSAGAGGGG VVVVGANGSA EAQGELQLRT 60 TKVAPPPKRT STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE 120 PAVIAATGTG TIPANFTSLN ISLRSSGSSL SIPSHLRLAG LAGAPHFGGA RAADAWDRVV 180 GLGFGGGADA PSSATSSSSS PLLLSFHSGS VGLDVSPSAS TSPAAAAANT DLSRKRRWEQ 240 EMQQQQYHQQ MAGYTQSQIP AGTVWMVPSS NAQAAGGGAP PGGGGESIWT FPQSGSGGGG 300 GAATVYRGVP SGLHFMNFPG TPMALLPGGQ QLGLAGAGGG GEGHSGILAA LNAYRAQAGQ 360 PDAGAAAQNG AHGSSQHQHH GGGGDERHES MSASDS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MDFTGDGGGG RRPNFPLQLL GKKEEQTCST SQSAGAGGGG VVVVGANGSA EAQGELQLRT  60
TKVAPPPKRT STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE  120
PAVIAATGTG TIPANFTSLN ISLRSSGSSL SIPSHLRLAG LAGAPHFGGA RAADAWDRVV  180
GLGFGGGADA PSSATSSSSS PLLLSFHSGS VGLDVSPSAS TSPAAAAANT DLSRKRRWEQ  240
EMQQQQYHQQ MAGYTQSQIP AGTVWMVPSS NAQAAGGGAP PGGGGESIWT FPQSGSGGGG  300
GAATVYRGVP SGLHFMNFPG TPMALLPGGQ QLGLAGAGGG GEGHSGILAA LNAYRAQAGQ  360
PDAGAAAQNG AHGSSQHQHH GGGGDERHES MSASDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064240	0.0	AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBank	AP003513	0.0	AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBank	AP003569	0.0	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655935.1	1e-154	PREDICTED: transcription factor TCP14-like
Swissprot	Q93Z00	1e-49	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A0E0L9K8	0.0	A0A0E0L9K8_ORYPU; Uncharacterized protein
STRING	OPUNC06G07840.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-45	TCP family protein

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]