PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G06560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 288aa    MW: 30677.6 Da    PI: 10.281
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G06560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.15e-1390175697
           DUF573   6 lwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      +w++ De++lL + + f+a++g  p   d+  +++ +++sis+++ +  +  K++r K Kf +  +        + +++h++ +  l+  +Wg
  OPUNC06G06560.1  90 VWNDADEVALLTAAVAFRARNGFAPRLpDMGVLFKSLRGSISSHIDQAKVYYKLKRNKSKFLHAPSA-------ASTSPHERRVRALCAELWG 175
                      8**********************98877**********************************99998.......8899999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.6E-1290175IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEAATDAALL LHPSSPRSKK RSSSSSSRRA AGDRRPHART TNPSLSPRGA GGDPGAPSRK  60
SERKRRPRSL ALAVHGHASA SGGAGGPGLV WNDADEVALL TAAVAFRARN GFAPRLPDMG  120
VLFKSLRGSI SSHIDQAKVY YKLKRNKSKF LHAPSAASTS PHERRVRALC AELWGSELAP  180
LPAEGDADAA EADERDAEDG YVGGSLDVSV RLPVVSEVLG DYWRKNGRVL SGVSLEKGLA  240
LVGPEEGRMV EAKWKRQLEV ETQTQGCRHD LAKEVCAMLI DAVRGLGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166ERKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047580.0AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8305130.0CT830513.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA036D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641305.11e-131formin-like protein 5
TrEMBLA0A0E0L9680.0A0A0E0L968_ORYPU; Uncharacterized protein
STRINGOPUNC06G06560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.13e-08DNA-binding storekeeper protein-related transcriptional regulator