PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G06380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 265aa    MW: 27257.3 Da    PI: 6.9613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G06380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-057193123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F+++  L  H++ H
  OPUNC06G06380.1 71 FECHYCRRNFPTSQALGGHQNAH 93
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.12E-66899No hitNo description
PfamPF139124.8E-67095IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3237198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAPHGMHGA AVAASASSTV PQPDATIRLF GRDVSNDEAV VVVGQLPKEE EEEAGGGDGG  60
AAAGERETRR FECHYCRRNF PTSQALGGHQ NAHKRERQHA RRAHLEASLA AAHYLDPAAH  120
VVYGASLFGY GHHAAAVSPQ YGYGPVWESS AVAPGLYATS MARPAAYGRG VDVSALWRAA  180
SSSSSPMMGS SGGGGAFGTA AGGRHSEAAT AAAALVGCRA GKDENVVMSV VTSLPSLPSW  240
LPASEKMGRS ELGQEPGVVS LELRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047540.0AP004754.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0529B09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882184.11e-107zinc finger protein 8-like
TrEMBLA0A0E0L9420.0A0A0E0L942_ORYPU; Uncharacterized protein
STRINGOPUNC06G06380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.17e-18zinc finger protein 8