PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G05770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 400aa    MW: 42621.8 Da    PI: 5.8712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G05770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12249294555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  OPUNC06G05770.1 249 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 294
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.24E-13242298No hitNo description
SuperFamilySSF474593.01E-17242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17246303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-9249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDYSAGSYIW PGNSGSENYN FVDGSSESYA EGTLPPSGYF VGAGSDRSLK ITENERNPTM  60
LANGCLPYNT QAHPLSGQIL PKAQTLCPAF QNVSSFMEPV NLGAFSFQGA QNAAMLNKTS  120
LPNGNPSLFD NAATASLHDS KEFLNGGSIP SFGIVLQALG ADGLKAAQQE QNVRNIPLPT  180
LTSGSHLAVT DAQGPPLPSK IPPLIHDHKS EYPINHSSDV EPQANSAPGN SASAKPRTRA  240
RRGQATDPHS IAERLRREKI SERMKNLQDL VPNSNKADKA SMLDEIIDYV KFLQLQVKVL  300
SMSRLGAPGA VLPLLRESQT ECHSNSSLSA STVSQGPPDM PDSEDSSTFE QEVVKLMETS  360
ITSAMQYLQN KGLCLMPIAL ASAISNQKGM AAAAAIPPEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621270.0AK062127.1 Oryza sativa Japonica Group cDNA clone:001-045-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644035.10.0transcription factor bHLH82 isoform X2
TrEMBLA0A0E0L8W40.0A0A0E0L8W4_ORYPU; Uncharacterized protein
STRINGOPUNC06G05770.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-58LJRHL1-like 3