PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G04650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 31682.7 Da PI: 4.0548 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2.1e-07 | 142 | 181 | 4 | 43 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 WT E+ l++++ + +G g+W+ I+r++ +t++q+ + OPUNC06G04650.1 142 WTDYEHRLFLNGMRAYGRGDWRNISRYFVRSKTPEQVSVY 181 *****************************999**998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.682 | 137 | 190 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-5 | 138 | 188 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.88E-11 | 142 | 187 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.92E-7 | 142 | 186 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-6 | 142 | 181 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDATFGMEWT AAELGEARSV VTRVSNDYNA GVGSSNGNGA GDTKHDRIVR ELQATFPSRT 60 MVQVIDLYID LAVEMVQAAA AQPQDAGVGS SVNNNDVVDA GMVFGGAPME GAVEQAPLAP 120 VAVNGGDGEV VNQDNDDDDE FWTDYEHRLF LNGMRAYGRG DWRNISRYFV RSKTPEQVSV 180 YAENYFHIME IAAAMDDNDD DHENNNNNLG GGGQLPAIVG VAHGPAAGHI APATSSNAAT 240 AAANNNVVAP FWAPLLYNPE IEQRMMEMQA QSQQAWDDQQ MKMAAAATPK EGAADK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002854 | 1e-125 | AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15. | |||
GenBank | AP014962 | 1e-125 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-125 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642111.1 | 1e-126 | transcription factor SRM1 | ||||
TrEMBL | A0A0E0L8G9 | 0.0 | A0A0E0L8G9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G04650.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14190 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-14 | Homeodomain-like transcriptional regulator |