PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G04640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 406aa    MW: 44509 Da    PI: 4.2653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G04640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-13188231447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WTteE+ +++++ + +G g+Wk I++++ +++t+ q+ s+ qky
  OPUNC06G04640.1 188 WTTEEHRRFLRGLRVYGRGDWKNISKYFVTTKTPVQVSSHAQKY 231
                      *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.824180236IPR017930Myb domain
SuperFamilySSF466891.57E-16183237IPR009057Homeodomain-like
SMARTSM007171.3E-10184234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-9186233IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-14187234IPR006447Myb domain, plants
CDDcd001671.77E-9188232No hitNo description
PfamPF002492.4E-10188231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEMEWTAVEL DEARSIVARL SNAYDSGTAV AGAGNGNGDT RHDRIVRELQ AWFPWRTMPQ  60
LIELYIDLME EMSQAADPQP QYDDAGAVID PTFDFMNDDN FVGMPPVQQA DHAMNNVVVN  120
AGMNYYGGGA AGMVFGGAPM GETVEQAAPP APAPAPVPVV MNRNDLEVIN QGGGRHRAAP  180
TNTTGRFWTT EEHRRFLRGL RVYGRGDWKN ISKYFVTTKT PVQVSSHAQK YFRRVESAAG  240
DKQRYSINDV GLNDADDTAM DDTNSNSNNN NFGGWQTLAF AGGHLEPITG GGGAGHIIAP  300
ASSSAAAMNS VAQFWAPLLY NPQMQQQFMQ MQAQTQQAWN DQHMMMAAGG AATPMEGATD  360
NFEPAGAANY YYYQQQQQQQ EEEEEEGGAY GVPADQWMMN QNNNMF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.11e-112PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0E0L8G80.0A0A0E0L8G8_ORYPU; Uncharacterized protein
STRINGOPUNC06G04640.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-22MYB family protein