PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G03640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 382aa    MW: 40856.9 Da    PI: 6.0739
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G03640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-28140200259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g++fpr+YYrCt++   +Cp++k+v+rs+ d  v+++tY+g H+++
  OPUNC06G03640.1 140 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnsqSCPATKQVQRSDADLAVFDVTYQGAHTCH 200
                      8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27128201IPR003657WRKY domain
PROSITE profilePS5081122.309134197IPR003657WRKY domain
SuperFamilySSF1182902.48E-24138201IPR003657WRKY domain
SMARTSM007747.2E-40139201IPR003657WRKY domain
PfamPF031062.4E-26140200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHGGGRG EEYYRGVARQ LQCTFAKAMG  60
VARAIEAAAG AGGGASGSRG TTGDRSDSPR SADESSGRTA RDAVVAQQER HHDTIKRRKG  120
LPRWTEKFRV PDASLEATPD DGFSWRKYGQ KDILGAKFPR GYYRCTYRNS QSCPATKQVQ  180
RSDADLAVFD VTYQGAHTCH QRQRHAAATS PPAAGDQPPP QADPSVELLV NFKHGLKVET  240
NGLSPPPPPP PTNFHDGNDQ HFCFPSMPPF HAGVGPPPPP PDDALGGVCN NFSSPFVSPA  300
GSAAGESYFS MEHSYEPRGQ FVMSRGDSSE LHEVVSAAAS SAVVDPAAGG FDYPLYHGEV  360
DPHLPFPPLF GHASMYGQYR DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-181411971874Disease resistance protein RRS1
5w3x_D5e-181411971874Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419190.0AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence.
GenBankAK2879850.0AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence.
GenBankAY6769320.0AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643057.10.0probable WRKY transcription factor 30
TrEMBLA0A0E0L8490.0A0A0E0L849_ORYPU; Putative WRKY53 transcription factor
STRINGOPUNC06G03640.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-41WRKY family protein