PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G00450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18175.8 Da PI: 10.3727 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.5 | 3.1e-27 | 15 | 64 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+++ rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s OPUNC06G00450.2 15 RIEDTTSRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 64 8*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.651 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-35 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-29 | 7 | 94 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 8 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-26 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.61E-32 | 16 | 76 | No hit | No description |
PRINTS | PR00404 | 1.5E-25 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAAAAGGRRR REMRRIEDTT SRQVTFSKRR KGLLKKASEL SVLCDAEVAL LVFSPRGRFF 60 HFASATSSLE ETIDRYISHT QEAPANKKPR ELTVKQKKLM DKILQLQQQE KILSEENALL 120 RDQGKVQHAP IGAPEREMNH NQHVQDIDVD TELVIGRRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-17 | 7 | 79 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 7 | 79 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 7 | 79 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 7 | 79 | 1 | 71 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-17 | 7 | 81 | 2 | 74 | MEF2C |
5f28_B | 5e-17 | 7 | 81 | 2 | 74 | MEF2C |
5f28_C | 5e-17 | 7 | 81 | 2 | 74 | MEF2C |
5f28_D | 5e-17 | 7 | 81 | 2 | 74 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 30 | RRREMRRIEDTTSRQVTFSKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241055 | 1e-122 | AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642540.1 | 1e-73 | MADS-box transcription factor 50-like isoform X1 | ||||
Refseq | XP_015642541.1 | 1e-73 | MADS-box transcription factor 50-like isoform X1 | ||||
Swissprot | A2Z9Q7 | 3e-30 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
Swissprot | P0C5B2 | 2e-30 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0E0L6V4 | 1e-113 | A0A0E0L6V4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G00450.2 | 1e-114 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-28 | AGAMOUS-like 20 |
Publications ? help Back to Top | |||
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