PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G24840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 303aa    MW: 32943.7 Da    PI: 6.4359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G24840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.52.1e-26149207259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers e p v+++tY  eH h 
  OPUNC05G24840.1 149 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPEKPGVLVVTYIAEHCHA 207
                      699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.529143209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-26144209IPR003657WRKY domain
SuperFamilySSF1182909.94E-24146209IPR003657WRKY domain
SMARTSM007742.3E-31148208IPR003657WRKY domain
PfamPF031069.1E-22150206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEYSNDWDLQ ALVRSCGTAV ADSESEPPAP STRRAETVVV GRAAGGAPEF VGQPVRSAAA  60
SFYDLEYLDV YHELPRAPFL VTAQSTSRER GEGEHEVLIS FPAASTSGQG RKQPGRKPGV  120
RTARPKRSKK SQLKKVVCEV PVADGGVSTD LWAWRKYGQK PIKGSPYPRG YYKCSSLKAC  180
MARKMVERSP EKPGVLVVTY IAEHCHAVPT QLNSLAGTTR NNKPASPDHH HHHHQPSPGG  240
ASTDEAATAA KPEDSADTCS MADDENDLWA PVEMDMDDFF GPFDDDLDHF LDGDGVLGRR  300
LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-18130210280Disease resistance protein RRS1
5w3x_D8e-18130210280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-174CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638808.11e-180WRKY transcription factor 22-like
TrEMBLA0A0E0L6900.0A0A0E0L690_ORYPU; Uncharacterized protein
STRINGOPUNC05G24840.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-39WRKY family protein