PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G20300.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 678aa    MW: 73267.1 Da    PI: 6.9238
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G20300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-24131232199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +
  OPUNC05G20300.1 131 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKTVR-PSQELIAMDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--RGD 221
                      99****************************864443.4569************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++++r+
  OPUNC05G20300.1 222 DGQLRLGIRRA 232
                      8889**99986 PP
2Auxin_resp106.43.3e-35257337182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+++++ksvF++++nPr+++se++v++++++k+l++++s+GmRfk+ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L
  OPUNC05G20300.1 257 VASSLENKSVFHICFNPRSGASEYIVPYWRFLKSLNHPFSIGMRFKVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 337
                      578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-42120268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-39126234IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-23129231No hitNo description
PROSITE profilePS5086313.042131233IPR003340B3 DNA binding domain
SMARTSM010197.4E-24131233IPR003340B3 DNA binding domain
PfamPF023622.5E-22131232IPR003340B3 DNA binding domain
PfamPF065075.8E-28258337IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGIDLNTVEE EAEEGTAAAC GGELWHACAG PGVALPRRGS ALVYLPQAHL AAGGGEVPPA  60
GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGEML RRNFREGGCE DGAGEMEGCD  120
AEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKTVRPSQE LIAMDLHGTQ  180
WKFRHIYRGQ PRRHLLTTGW SSFVNRKKLV SGDAVLFLRG DDGQLRLGIR RAVQLRNEAL  240
FEPVNSSDSK LRILSSVASS LENKSVFHIC FNPRSGASEY IVPYWRFLKS LNHPFSIGMR  300
FKVCYESEDA NERSAGLISG ISEVDPIRWP GSRWKCLLVR WDDSTDSSHQ NRVSPWEIER  360
VGGSVSVTHS LSSGSKRTKL HFPQGDGNGH PDSMGTENFH RVLQGQEFRG SRSHGVVCSE  420
SPGVPNFQAP DNKRFSADMR GYMRPASGPP QRNTEFAYQP VGFSESLGFP EVLQGQEMSQ  480
VVPLFRGATF GARTQNDRVV SANSVHRSAA PSGLLASTQG HPISQFTLSS SKVSSPSSVL  540
MFNQATAPNH ETEGGTNNKG MHGSQFASQE MLTETVTWPG TQRQTPSEIT SNQFAMARIP  600
APPSGAETGS PKRDAGRSSC RLFGFSLTGN MPGEDGEVLE DGTIEAGCEN PPVLELFGHS  660
HSTPGALHAL CAAAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-921935918353Auxin response factor 1
4ldy_B1e-921935918353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679270.0AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637659.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0E0L4N00.0A0A0E0L4N0_ORYPU; Auxin response factor
STRINGOPUNC05G20300.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-142ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]