PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G19450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 152aa MW: 16677.7 Da PI: 9.2175 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11 | 0.00078 | 64 | 79 | 39 | 54 |
TCHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksL 54 + a++L +A+eYIk L OPUNC05G19450.2 64 DTASVLHEAIEYIKFL 79 679***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-8 | 46 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.73E-4 | 46 | 84 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-6 | 51 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MVQSNTTERL HHHQDAGSPA TRSSPGSPAA AKKPRIEAPS PLPTFKVRKE KLGDRITALQ 60 QLTDTASVLH EAIEYIKFLH DQVASLSSPY LRCGRPMQLQ HQQGSHKAND NGEGTQDLRS 120 RGLCLVSVAS TYTVASETAT EFWHPTFGGT FR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837834 | 1e-123 | CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638164.1 | 4e-89 | transcription factor bHLH68 isoform X1 | ||||
Refseq | XP_015638165.1 | 4e-89 | transcription factor bHLH68 isoform X2 | ||||
Swissprot | Q94JL3 | 1e-41 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A0E0L4C6 | 1e-109 | A0A0E0L4C6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G19450.1 | 1e-105 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 6e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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